Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1032 a.a., Excinuclease ABC subunit A from Variovorax sp. SCN45
Score = 1252 bits (3240), Expect = 0.0
Identities = 625/995 (62%), Positives = 765/995 (76%), Gaps = 59/995 (5%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
+I +RGARTHNLKN++L IPR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR
Sbjct: 39 RISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 98
Query: 63 QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPE 122
QFL LM+KPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TE++DYLRLLYAR G P CP+
Sbjct: 99 QFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPD 158
Query: 123 HQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGE 182
H +PL+AQT+SQMVD VL +P+ ++M+LA + +E+KGE V+ + A G++R R+DG+
Sbjct: 159 HHLPLQAQTVSQMVDAVLAIPDEPRLMILAPVAREKKGEFVELFAEMQAAGYVRFRVDGQ 218
Query: 183 TCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDG- 241
T + D PKL+ +KH I++++DR + R D+QQRLAESFE AL ++ G + + +G
Sbjct: 219 TYEYNDLPKLKKTEKHDIDIVIDRLRARPDMQQRLAESFEAALRMAEGRAIALELGAEGA 278
Query: 242 --EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
+E +F+A FACP C YS+ ELEPRLFSFN+P GACP+CDGLG ++ FDP RV+ +L
Sbjct: 279 PDKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPSL 338
Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
SLA GAI+GWD++N YYF M+ ++A+HY FDV PF L +Q+++LHGS EI+F Y
Sbjct: 339 SLASGAIKGWDRRNGYYFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNY 398
Query: 360 INDRGDIR----LKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKI 415
+ G+ KKHPFEGI+ N+ RRYR+T+S VRE+LA++ + +PC C G+RL+
Sbjct: 399 TMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRR 458
Query: 416 EARNVFIND-------------TALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEI 462
EARNVF+ D A+ + L++ D+L +FQ LKL G +A IA+KV++EI
Sbjct: 459 EARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREI 518
Query: 463 NDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 522
RL+FL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 519 GLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 578
Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
N+RL+ TL HLR++GN+V+VVEHDED I ADHVID+GPGAGVHGG V+A+G E+ AN
Sbjct: 579 NDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGVHGGRVMAQGTYAEVSAN 638
Query: 583 PNSLTGQYLSGVKKIAVPEQRTP----------KDAKK---------------------- 610
P+SLTGQYLSG +KI VP RT + KK
Sbjct: 639 PDSLTGQYLSGTRKIEVPRHRTAWLPVVSKPAFNEGKKPSRFPQSPAAERRAAREAAHLA 698
Query: 611 ------TVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGA 664
+ + GA GNNLKNV ++ PVGL TCVTGVSGSGKSTL+NDT + L A
Sbjct: 699 TQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRA 758
Query: 665 TTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRG 724
PA + S++G+E+FDKVI++DQSPIGRTPRSNPATYTG+FTPIREL A T +R RG
Sbjct: 759 -HEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERG 817
Query: 725 YQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTI 784
Y PGRFSFNV GGRCEACQGDGV+KVEMHFLPDVYVPC+VC G+RYNRETLEV YKGK I
Sbjct: 818 YGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVLYKGKNI 877
Query: 785 DEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELS 844
++L+MTVE A EF VP I RKL+TL+DVGLSYI+LGQSATTLSGGEAQRVKLA ELS
Sbjct: 878 AQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELS 937
Query: 845 KRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLG 904
KRDTG+TLYILDEPTTGLHF DI+ LL VLH+LRD GNT+VVIEHNLDVIKTADW+ID+G
Sbjct: 938 KRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMG 997
Query: 905 PEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
PEGG GGG ++ EGTPED+A EASHT R+LK LL
Sbjct: 998 PEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1032
Score = 63.5 bits (153), Expect = 7e-14
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 1 MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
+ +I V GA +NLKN+++ P L +TG+SGSGKS+L DTLY +A
Sbjct: 703 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 751
Query: 61 ARQFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG 116
AR E+P V+ IE I+++Q PRS T T ++ +R L A
Sbjct: 752 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETN 811
Query: 117 EPR 119
R
Sbjct: 812 TAR 814
Score = 59.3 bits (142), Expect = 1e-12
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 608 AKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTA 667
A++ + ++GA +NLKNVDL IP +TG+SGSGKS+L DT + + +A
Sbjct: 36 AQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSA 95
Query: 668 TPAPYRSIQG------LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
+ + +E I I+Q PRS T T I +R L+A
Sbjct: 96 YARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYA 149