Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 877 a.a., Excinuclease ABC subunit A paralog of unknown function from Variovorax sp. SCN45
Score = 487 bits (1253), Expect = e-141
Identities = 288/731 (39%), Positives = 397/731 (54%), Gaps = 67/731 (9%)
Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
FS N P GACPTC GLG ++ D +LS+ + AI W ++ Q L +
Sbjct: 138 FSPNTPQGACPTCHGLGRVFEVTEQSMVPDDSLSIRERAIAAWPPA--WHGQNLRDILVT 195
Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
DV P+ L KK + IL + + F R +R K P F G
Sbjct: 196 MGIDVDKPWRNLPKKTRNWILFTEEQPTVPVYAGFTPAETRAAVRSKMEPSYQGTFMGAR 255
Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIA- 436
+ + T S ++ A+++ C C G RLK EA +V + I +S+A
Sbjct: 256 KYVLHTFATTHSALMKNRAARFMVGGDCPQCHGKRLKREALSVRFAGHDIGEIARMSLAR 315
Query: 437 --DALTFFQELKLEGQRAQIA-------------------------------------EK 457
D L + G A +A ++
Sbjct: 316 LADVLRPVARGESPGAAAPVATRRASLRQAAPGKGASHASAPDVRRTPNQSAEKRIAAQR 375
Query: 458 VMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIG 517
+ E+ +R+ L+ +GL YL+L RS TLS GE QR+RLA+QI + L GV+YVLDEPS G
Sbjct: 376 IAHEMLERVTTLLELGLGYLSLDRSTPTLSPGELQRLRLATQIRSNLFGVVYVLDEPSAG 435
Query: 518 LHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVE 577
LH D E L+ L L+ GN++ VVEHD D +R AD ++D+GP AG GG+V+ G E
Sbjct: 436 LHPADGEALVLALDTLKRSGNSLFVVEHDLDLMRRADWLVDVGPDAGEKGGLVLYSGPPE 495
Query: 578 EIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCV 637
+ S T +YL V RTP+ K L+G NNL N+ + P+G+ + V
Sbjct: 496 GLRHVAQSHTARYLFSAHAGPVRPPRTPRGWLK---LEGLTRNNLSNLAAAFPLGVLSAV 552
Query: 638 TGVSGSGKSTLINDTFFKIAHTALNG-------------ATTATPAPYRSIQGLEHFDKV 684
TGVSGSGKS+L++ ++ L A A+ +QG+E ++
Sbjct: 553 TGVSGSGKSSLVSQALVELVAAHLGHEPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRL 612
Query: 685 IDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQG 744
+ +DQ PIGRTPRSN ATYTG+F +R+LFAGT+ +++R + PGRFSFNV GRC C+G
Sbjct: 613 VRVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTRAAKARRFDPGRFSFNVAKGRCPTCEG 672
Query: 745 DGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPV 804
+G + VE+ F+P VY PC C G R+N +TL VR + +TI +VL MTV++A FF+
Sbjct: 673 EGFVSVELLFMPSVYAPCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFEADVA 732
Query: 805 IARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHF 864
I R LQ L +GL Y+RLGQ AT LSGGEAQR+KLA EL + G TLY+LDEPTTGLH
Sbjct: 733 IERPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGLHP 792
Query: 865 HDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVA 924
D+ +L + L L D GNTV+VIEH + ++ DW+ID+GP G GG I+A G P DVA
Sbjct: 793 ADVDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSDVA 852
Query: 925 QIEASHTARFL 935
+ + S TA +L
Sbjct: 853 RSKKSRTAPYL 863
Score = 130 bits (326), Expect = 5e-34
Identities = 65/130 (50%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ VRGAR HNL+N+++ IPRD L+V +G+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 12 VRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRYFESVAPYARR 71
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
+ + P VD I+GL PA++++Q+ + RS+VG++T + LR+LY+R G+ P
Sbjct: 72 LIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAGD--YPAR 129
Query: 124 QVPLKAQTIS 133
Q L A+ S
Sbjct: 130 QPMLYAEDFS 139
Score = 129 bits (325), Expect = 6e-34
Identities = 76/203 (37%), Positives = 113/203 (55%), Gaps = 15/203 (7%)
Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
PC +C G+R + +V + D + ++ +++ +A TFF+ A +A I
Sbjct: 689 PCPACHGSRFNAQTLSVRLRDRTIADVLAMTVDEAHTFFE--------ADVA------IE 734
Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
LQ L +GL YL L + A LSGGEAQRI+LA+++ G +YVLDEP+ GLH D
Sbjct: 735 RPLQLLKAIGLGYLRLGQPATELSGGEAQRIKLATELQRAQRGDTLYVLDEPTTGLHPAD 794
Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
++L L +L + GNTV+V+EH+ + D VID+GPGAG GG +VA G ++ +
Sbjct: 795 VDKLTAQLDNLVDAGNTVIVIEHEMRLVAGCDWVIDMGPGAGGEGGRIVASGAPSDVARS 854
Query: 583 PNSLTGQYLSGVKKIAVPEQRTP 605
S T YL+ A E + P
Sbjct: 855 KKSRTAPYLARWTSPAHRETQRP 877
Score = 51.6 bits (122), Expect = 2e-10
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 23/125 (18%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+++ G +NL N+ P L +TG+SGSGKSSL L VE ++A+
Sbjct: 527 LKLEGLTRNNLSNLAAAFPLGVLSAVTGVSGSGKSSLVSQAL--------VELVAAHLGH 578
Query: 64 FLSLMEKPD---------------VDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYL 108
E+ + V +EG+ + ++QK PRS + T T ++D++
Sbjct: 579 EPPPAEEEEGEEPAALASRTSGHIVQGMEGIRRLVRVDQKPIGRTPRSNLATYTGLFDHV 638
Query: 109 RLLYA 113
R L+A
Sbjct: 639 RKLFA 643
Score = 49.3 bits (116), Expect = 1e-09
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAP 671
V ++GA +NL+NVD+ IP +G+SGSGKS+L T + A + AP
Sbjct: 12 VRVRGAREHNLRNVDVDIPRDALVVFSGISGSGKSSLAFGTLYAEAQRRY----FESVAP 67
Query: 672 YR----------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELF--AGTQE 719
Y ++ ++ + + Q RS+ + T + + +R L+ AG
Sbjct: 68 YARRLIDQVGVPAVDAIDGLPPAVALQQQRGTPGARSSVGSVTTLSSLLRMLYSRAGDYP 127
Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVI--KVEMHFLPD 757
+R FS N G C C G G + E +PD
Sbjct: 128 ARQPMLYAEDFSPNTPQGACPTCHGLGRVFEVTEQSMVPD 167
Score = 32.7 bits (73), Expect = 1e-04
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 260 RELEPRLFSFNNPAGACPTCDGLG 283
R +P FSFN G CPTC+G G
Sbjct: 651 RRFDPGRFSFNVAKGRCPTCEGEG 674