Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1947 a.a., excinuclease ABC subunit UvrA from Variovorax sp. OAS795
Score = 631 bits (1628), Expect = 0.0
Identities = 398/1031 (38%), Positives = 556/1031 (53%), Gaps = 127/1031 (12%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNL+N++L I ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 6 IRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
FL M+KP VD +EG+ PAI+I+Q + + RSTVGT+TE+ D+L+LLYAR + E
Sbjct: 66 FLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAQLFDRET 125
Query: 124 QVPLKAQTISQMVDKVLE--LPEGSKMMLLATIVKERKGEHVKTLEN-LAAQGFIRARID 180
+ ++ + + ++ E G +++ V+ G + + L+A GF R + +
Sbjct: 126 ALLVRHDSPDSIYAQIAERAAAAGDPRLVVTFPVELPAGTSAEEVTQWLSASGFTRVQSE 185
Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVV----AP 236
E T P K+ ++V+ DRF++ S + R+ E+ E AL+ G V V A
Sbjct: 186 REVATPTGPRKV-------LDVVADRFRISSAERSRVVEAIEVALKRGSGRVTVHATGAE 238
Query: 237 MEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQD 296
+ FS CP + P +FSFN+ GAC TC G G D VI +
Sbjct: 239 ENASTDVWKFSTGLHCPESDIRYIDPIPSMFSFNSAVGACDTCRGFGRVIGVDLGLVIPN 298
Query: 297 ANLSLAQGAIR-----GWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSG 351
L+L GAI+ W + L AE TP+NKL+ + + ++ G+
Sbjct: 299 DKLTLRAGAIKTIQTPAWKEAQ----DDLMRHAEAAGIPRDTPWNKLTDEQKHWVIEGTP 354
Query: 352 RTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNS----VREELAKYISNKPCSS 407
K+ + + + R + ES + +R L+KY S PC
Sbjct: 355 N---------------YKEGNWNKQWYGVRRFFGYLESKAYKMHIRVLLSKYRSYTPCPV 399
Query: 408 CDG-----------------------------------TRLKIEA--------------- 417
C G TR ++EA
Sbjct: 400 CSGARLKLDSLLWRIGSKEDADAVLDPAKRFMPTGVKWTRAQLEALPGLCLHDLMLLPIE 459
Query: 418 --RNVFINDTALPT-----------IVELSIADALTFFQELKLEGQ-----RAQIAEKVM 459
R F T P+ + +++A+A + L EG+ AQ + +
Sbjct: 460 RLRRFFDRMTPSPSGGGQGWGQAASVKAVAVAEAASPHPHLPPEGEGARSGEAQALKLLF 519
Query: 460 KEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLH 519
+EI RL++L +VG+ YL L R + TLSGGE QRI L + +G LV ++VLDEPSIGLH
Sbjct: 520 EEITTRLRYLHDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLH 579
Query: 520 QRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEI 579
RD R+ + + LR+ GNT++VVEHD + AD VID+GPG G+ GG +V +G ++
Sbjct: 580 PRDMNRITEAMLRLRDAGNTLVVVEHDPAVMLAADRVIDMGPGPGIRGGQIVFDGTTDQ- 638
Query: 580 IANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTG 639
+ + ++LTGQYL G KKI + +R + + L+G +NL+N+ + P+ CVTG
Sbjct: 639 LRDADTLTGQYLGGRKKIGMGFKRLVSENTHRLILEGVREHNLRNITVDFPLARLVCVTG 698
Query: 640 VSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSN 699
VSGSGKSTLI D A G T TP + + G +H V+ +DQSPIG+T RSN
Sbjct: 699 VSGSGKSTLIQDVLAP-ALMRHFGKATETPGAHDRMLGADHLGDVVFVDQSPIGKTARSN 757
Query: 700 PATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVY 759
PA+Y G + IRE+FA SR RGY +FSFN GRC C G G VEM FL DVY
Sbjct: 758 PASYVGAWDAIREIFATAALSRQRGYTASKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVY 817
Query: 760 VPCDVCKGKRYNRETLEVRY----KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDV 815
+ C C GKRY E LEVR KG + +VLD+TV +A F+ + R LQ + DV
Sbjct: 818 LRCPDCDGKRYRPEILEVRVERKGKGYNVADVLDLTVAEAAAVFEADRDVLRVLQPISDV 877
Query: 816 GLSYIRLGQSATTLSGGEAQRVKLA---RELSKRDTGK--------TLYILDEPTTGLHF 864
GL Y++LGQ TLSGGEAQR+KLA E +K T TL++ DEPTTGLHF
Sbjct: 878 GLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKSATASRQSVARKGTLFLFDEPTTGLHF 937
Query: 865 HDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVA 924
DI +L+ L +L + G++++VIEHNLDVI+ +DW IDLGPEGG+GGG+++AEGTPE +
Sbjct: 938 DDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWCIDLGPEGGEGGGMVVAEGTPEQLR 997
Query: 925 QIEASHTARFL 935
+ AS T L
Sbjct: 998 ENRASLTGAAL 1008
Score = 507 bits (1305), Expect = e-147
Identities = 283/595 (47%), Positives = 374/595 (62%), Gaps = 41/595 (6%)
Query: 385 RDTESNSVREELAKY----ISNKPCSSCDGTRLKIEARNVF--------INDTALPTIVE 432
RD +S + A+ +++ C +C+GTRL AR V + + +
Sbjct: 1352 RDDDSKGREQTFAEPEVEDLADVACPTCEGTRLNATARAVSFGASRADGLGGIGITELAR 1411
Query: 433 LSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQ 492
+S+ + +F+ L L G+ A+IA ++ EI RL+FL VGL YL L R A TLSGGEAQ
Sbjct: 1412 MSVTEVRQWFEGLALTGREAEIARDLVPEIKSRLEFLEEVGLGYLTLDRGAPTLSGGEAQ 1471
Query: 493 RIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRM 552
RIRLA+Q+G+ L GV YVLDEP+IGLH RDN+ LL L L + GNT++VVEHDED IR
Sbjct: 1472 RIRLAAQLGSNLQGVCYVLDEPTIGLHARDNQILLDALHKLGDKGNTLVVVEHDEDTIRR 1531
Query: 553 ADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRT-------P 605
ADH+IDIGP AG GG +VAEG+V +I A +S TG+YL + + +R
Sbjct: 1532 ADHIIDIGPSAGKRGGRLVAEGSVADIQAAGDSQTGRYLRDAIRHPLQARRLIPSPDPQA 1591
Query: 606 KDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTAL---- 661
+D+ + + GA +NL+ V ++P+ VTGVSGSGKSTL D +
Sbjct: 1592 EDSGNWLTVHGADLHNLQGVTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQAVVIQRM 1651
Query: 662 ----NGATTATPAPYRS----IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIREL 713
A A P S ++G E D+V+++DQ+PIG+TPRS PATY G + IR+L
Sbjct: 1652 TKAGRDADAAGKRPAWSGCARVEGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKL 1711
Query: 714 FAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRE 773
FA T E+++RGY P RFSFN GRC C G GV +EM FLPDV VPC+VC G R+N E
Sbjct: 1712 FADTLEAKARGYGPARFSFNTGEGRCAGCDGAGVRTIEMSFLPDVKVPCEVCHGARFNPE 1771
Query: 774 TLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGE 833
TL V ++GK+I EVL M V++A EFF +P I+ LQ L DVGL Y+ LGQ + TLSGGE
Sbjct: 1772 TLAVSWRGKSIGEVLQMEVDEAVEFFAAMPNISHPLQLLKDVGLGYLTLGQPSPTLSGGE 1831
Query: 834 AQRVKLARELSK---------RDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTV 884
AQR+KL ELSK + TLY+LDEPT GLH D+++L+ VLHRL + G++V
Sbjct: 1832 AQRIKLVTELSKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVEKLIHVLHRLVNGGHSV 1891
Query: 885 VVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
VVIEH+LD+I ADWIIDLGPEGG GG I+A PE+V ++ +HT L P+L
Sbjct: 1892 VVIEHDLDLIAEADWIIDLGPEGGNAGGRIVAAAPPEEVVRL-GTHTGVALAPVL 1945
Score = 220 bits (560), Expect = 8e-61
Identities = 123/308 (39%), Positives = 176/308 (57%), Gaps = 14/308 (4%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
IE+ AR HNLKN+++ IPR K V+TG+SGSGKS+LAFD L+ EGQRRY+ESL+AYAR
Sbjct: 1043 IEIVNAREHNLKNLSVNIPRGKFSVVTGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS 1102
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
+ +P+VD + G+ P ++IEQ+ + +STVGT TEV+ +LRLLY ++G C
Sbjct: 1103 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGIQHCTHD 1162
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
++ QT + +++ +G + LLA +V RKG + + + +GF R+DGE
Sbjct: 1163 GAAVQPQTPDSIAAQLMRNFKGQHIGLLAPLVSNRKGVYTELADWARPRGFTHLRVDGEF 1222
Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVV--------- 234
T P+L+ K+H+IE+ V V + L E+ ALE G+V V
Sbjct: 1223 LPTTGFPRLDRFKEHSIELPVASLDVLPSEETPLREALTKALEHGKGVVHVLSQLDGLKA 1282
Query: 235 -----APMEGDGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFD 289
G G +FS ACP C S EL+PRLFS+N+ G CP C G GV+ D
Sbjct: 1283 AMMAGVSAHGIGRVNVFSTLRACPVCSTSYAELDPRLFSYNSKHGWCPDCVGTGVKLSKD 1342
Query: 290 PDRVIQDA 297
+V D+
Sbjct: 1343 QRKVFDDS 1350
Score = 148 bits (373), Expect = 4e-39
Identities = 102/280 (36%), Positives = 149/280 (53%), Gaps = 44/280 (15%)
Query: 405 CSSCDGTRLKIEARNVFINDTA----LPTIVELSIADALTFFQELKLEGQRAQIAEKVMK 460
C CDG R + E V + + +++L++A+A F E R + +V++
Sbjct: 820 CPDCDGKRYRPEILEVRVERKGKGYNVADVLDLTVAEAAAVF-----EADRDVL--RVLQ 872
Query: 461 EINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLA------------SQIGAGLVGVM 508
I+D VGL+Y+ L + TLSGGEAQR++LA S+ G +
Sbjct: 873 PISD-------VGLDYVKLGQPVPTLSGGEAQRLKLAGFLAEAAKSATASRQSVARKGTL 925
Query: 509 YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGG 568
++ DEP+ GLH D RL++ L L G++++V+EH+ D IR +D ID+GP G GG
Sbjct: 926 FLFDEPTTGLHFDDIARLMRALRKLLEAGHSLIVIEHNLDVIRASDWCIDLGPEGGEGGG 985
Query: 569 MVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPE---------QRTPKDAK-----KTVEL 614
MVVAEG E++ N SLTG L+ + PE +R +AK +E+
Sbjct: 986 MVVAEGTPEQLRENRASLTGAALADYELAIGPEAYKVAERAARRYIANAKTAPGGNAIEI 1045
Query: 615 KGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF 654
A +NLKN+ ++IP G F+ VTGVSGSGKSTL D F
Sbjct: 1046 VNAREHNLKNLSVNIPRGKFSVVTGVSGSGKSTLAFDILF 1085
Score = 65.1 bits (157), Expect = 4e-14
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ V GA HNL+ + T+P +L+V+TG+SGSGKS+LA D L A Q ++ ++ R
Sbjct: 1598 LTVHGADLHNLQGVTATLPLHRLVVVTGVSGSGKSTLARDVLLASVQAVVIQRMTKAGRD 1657
Query: 64 FLSLMEKP------DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
+ ++P V+ E + + ++Q PRS T +D +R L+A
Sbjct: 1658 ADAAGKRPAWSGCARVEGYETIDRVLEVDQTPIGKTPRSCPATYIGFWDTIRKLFA 1713
Score = 52.4 bits (124), Expect = 3e-10
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 611 TVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPA 670
++ ++GA +NL+N+DL I G T VTG SGSGKS+L+ DT + +A
Sbjct: 5 SIRIRGARQHNLQNLDLDIRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 64
Query: 671 PYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
+ DKV I IDQ+ R+ RS T T + ++ L+A
Sbjct: 65 QFLDRMDKPAVDKVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYA 115
Score = 51.2 bits (121), Expect = 6e-10
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRY---VESLSA 59
++ + G R HNL+NI + P +L+ +TG+SGSGKS+L D L R + E+ A
Sbjct: 670 RLILEGVREHNLRNITVDFPLARLVCVTGVSGSGKSTLIQDVLAPALMRHFGKATETPGA 729
Query: 60 YARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
+ R DH L + ++Q RS + +D +R ++A
Sbjct: 730 HDRML-------GADH---LGDVVFVDQSPIGKTARSNPASYVGAWDAIREIFA 773
Score = 29.6 bits (65), Expect = 0.002
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 264 PRLFSFNNPAGACPTCDGLGVQ 285
P FSFN G C CDG GV+
Sbjct: 1725 PARFSFNTGEGRCAGCDGAGVR 1746