Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1038 a.a., excinuclease ABC subunit UvrA from Variovorax sp. OAS795
Score = 1248 bits (3228), Expect = 0.0
Identities = 626/1007 (62%), Positives = 765/1007 (75%), Gaps = 71/1007 (7%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
+I +RGARTHNLKN++L IPR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR
Sbjct: 33 RISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 92
Query: 63 QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPE 122
QFL LM+KPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TE++DYLRLLYAR G P CPE
Sbjct: 93 QFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPE 152
Query: 123 HQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGE 182
H +PL+AQT+SQMVD L +P+ ++M+LA + +E+KGE ++ + A G++R R+DG+
Sbjct: 153 HHLPLQAQTVSQMVDATLAIPDEPRLMILAPVAREKKGEFLELFAEMQAAGYVRFRVDGQ 212
Query: 183 TCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPM----- 237
T + D PKL+ +KH I+V++DR + R D+QQRLAESFE AL L+ G + +
Sbjct: 213 TYEYNDLPKLKKTEKHDIDVVIDRLRARPDMQQRLAESFEAALRLAEGRAIALELGARPE 272
Query: 238 -EGDG---------EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQY 287
DG +E +F+A FACP C YS+ ELEPRLFSFN+P GACP+CDGLG ++
Sbjct: 273 SSADGAAGAAAAADKEHLFNAKFACPICHYSLSELEPRLFSFNSPVGACPSCDGLGHREV 332
Query: 288 FDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIIL 347
FDP RV+ LSLA GAI+GWD++N YYF M+ ++A+HY FDV PF L +Q+++L
Sbjct: 333 FDPARVVAFPTLSLASGAIKGWDRRNSYYFSMIESVAKHYKFDVDAPFESLPASVQQVLL 392
Query: 348 HGSGRTEIEFKYINDRGDIR----LKKHPFEGILHNLERRYRDTESNSVREELAKYISNK 403
HGS EI+F Y + G+ KKHPFEGI+ N+ RRYR+T+S VRE+LA++ + +
Sbjct: 393 HGSAAEEIKFNYTMESGNFAGKKLTKKHPFEGIIPNMARRYRETDSVMVREDLARFRNLQ 452
Query: 404 PCSSCDGTRLKIEARNVFINDT-------------ALPTIVELSIADALTFFQELKLEGQ 450
PC C G+RL+ EARNVF+ D A+ + L++ D+L +FQ LKL G
Sbjct: 453 PCPDCGGSRLRPEARNVFLVDESARPADGGEPPRMAIFELSHLTLRDSLAWFQTLKLRGA 512
Query: 451 RAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYV 510
+A IA+KV++EI RL+FL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYV
Sbjct: 513 KADIADKVVREIGLRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYV 572
Query: 511 LDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMV 570
LDEPSIGLHQRDN+RL+ TL HLR++GN+V+VVEHDED I ADHVID+GPGAG+HGG V
Sbjct: 573 LDEPSIGLHQRDNDRLIGTLKHLRDIGNSVIVVEHDEDMIHAADHVIDMGPGAGIHGGRV 632
Query: 571 VAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTP----------KDAKKT--------- 611
+A+G+ ++ ANP+SLTGQYLSG KKI VP RT D KK
Sbjct: 633 MAQGSYAQVAANPDSLTGQYLSGAKKIEVPRHRTAWLPVVKKPAFNDGKKASRFPPSPAA 692
Query: 612 -------------------VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDT 652
+ + GA GNNLKNV ++ PVGL TCVTGVSGSGKSTL+NDT
Sbjct: 693 ERRAAREAAHLASQTDLQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDT 752
Query: 653 FFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRE 712
+ L A PA + S++G+E+FDKVI++DQSPIGRTPRSNPATYTG+FTPIRE
Sbjct: 753 LYTAVARTLYRAHEE-PAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRE 811
Query: 713 LFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNR 772
L A T +R RGY PGRFSFNV GGRCEACQGDGV+KVEMHFLPDVYVPC+VC G+RYNR
Sbjct: 812 LMAETNTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNR 871
Query: 773 ETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGG 832
ETLEV+YKG+ I ++L+MTVE A EF VP I RKL+TL+DVGLSYI+LGQSATTLSGG
Sbjct: 872 ETLEVQYKGRNIAQILEMTVETAHEFLKAVPTIERKLRTLLDVGLSYIKLGQSATTLSGG 931
Query: 833 EAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLD 892
EAQRVKLA ELSKRDTG+TLYILDEPTTGLHF DI+ LL VLH+LRD GNT+VVIEHNLD
Sbjct: 932 EAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLD 991
Query: 893 VIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
VIKTADW+ID+GPEGG GGG ++ EGTPED+A EASHT R+LK LL
Sbjct: 992 VIKTADWLIDMGPEGGAGGGTVVGEGTPEDIAANEASHTGRYLKRLL 1038
Score = 63.5 bits (153), Expect = 7e-14
Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 1 MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
+ +I V GA +NLKN+++ P L +TG+SGSGKS+L DTLY +A
Sbjct: 709 LQEIRVVGATGNNLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLY-----------TAV 757
Query: 61 ARQFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG 116
AR E+P V+ IE I+++Q PRS T T ++ +R L A
Sbjct: 758 ARTLYRAHEEPAAHESVEGIEYFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETN 817
Query: 117 EPR 119
R
Sbjct: 818 TAR 820
Score = 59.3 bits (142), Expect = 1e-12
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 608 AKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTA 667
A++ + ++GA +NLKNVDL IP +TG+SGSGKS+L DT + + +A
Sbjct: 30 AQQRISIRGARTHNLKNVDLDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSA 89
Query: 668 TPAPYRSIQG------LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
+ + +E I I+Q PRS T T I +R L+A
Sbjct: 90 YARQFLQLMDKPDVDVIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYA 143