Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 971 a.a., Excinuclease ABC subunit A from Sphingobium sp. HT1-2

 Score = 1096 bits (2835), Expect = 0.0
 Identities = 567/961 (59%), Positives = 709/961 (73%), Gaps = 28/961 (2%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I VRGAR HNLK +++ +PRD LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 6   ISVRGAREHNLKGVDVDLPRDSLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 65

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL +M+KPDV+HIEGLSPAISIEQK+TS NPRSTV T+TE+YDY+RLL+ARVG P  P  
Sbjct: 66  FLEMMQKPDVEHIEGLSPAISIEQKTTSRNPRSTVATVTEIYDYMRLLWARVGIPYSPAT 125

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
             P+ AQT+SQMVD+V+ LPEG++  LLA +V+ RKGE+ K L      G+ R RIDGE 
Sbjct: 126 GEPISAQTVSQMVDRVMLLPEGTRFYLLAPVVRGRKGEYRKELAEWQKAGYTRVRIDGEL 185

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEG--DG 241
             + D P L+   KH IEV+VDR  V +D+  RLA+SFE AL+L+ G+  V   E    G
Sbjct: 186 YLIEDAPALDKKYKHDIEVVVDRLAVNADMATRLADSFEQALKLADGLAFVDLAEDVVPG 245

Query: 242 EEQ------------------IFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLG 283
            E                   +FS  FACP  G+++ E+EPRLFSFN P GACP CDGLG
Sbjct: 246 REDKAQSAGKMKNAGIPANRIVFSEKFACPVSGFTIPEIEPRLFSFNAPMGACPACDGLG 305

Query: 284 VQQYFDPDRVIQDANLSLAQGAIRGWDQKNF---YYFQMLTALAEHYDFDVHTPFNKLSK 340
            +Q FDP+ V+ +  LSL +GA+  W + N    YY Q+L +LA+ + F + TP+ +L  
Sbjct: 306 ERQEFDPELVVPNEALSLKKGAVVPWAKSNPPSPYYMQVLGSLAKEFGFSLDTPWAELPG 365

Query: 341 KIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYI 400
           +++ IILHG+G   +  ++++ +    ++K PFEG++ NL RR   TES  +REEL+KY 
Sbjct: 366 EVKLIILHGTGGKPVTLRFVDGKKSYEVEK-PFEGVIGNLNRRLAQTESAWMREELSKYQ 424

Query: 401 SNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELK--LEGQRAQIAEKV 458
           +  PC +C G RLK EA  V I    +      S+ DAL FF  +   L  Q+ QIA  +
Sbjct: 425 TAMPCETCHGARLKPEALAVKIAGEDISVSTRRSVVDALAFFTAMPDALNDQQNQIARAI 484

Query: 459 MKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGL 518
           +KEI +RL FL NVGL+YLNL R++ TLSGGE+QRIRLASQIG+GL GV+YVLDEPSIGL
Sbjct: 485 LKEIVERLGFLNNVGLDYLNLDRTSGTLSGGESQRIRLASQIGSGLSGVLYVLDEPSIGL 544

Query: 519 HQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEE 578
           HQRDN+RLL TL  LR+LGN+V+VVEHDEDAIR AD+++D+GPGAGVHGG +VA+G + E
Sbjct: 545 HQRDNDRLLVTLKRLRDLGNSVIVVEHDEDAIRAADYIVDMGPGAGVHGGTIVAQGTLPE 604

Query: 579 IIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVT 638
           ++A+ +SLT  YL+G ++I VP +R     KK + +  A  NNL  V  SIP+G FTC+T
Sbjct: 605 LLAHKDSLTADYLNGTRRIEVPAKRRKGSGKK-LTVHNARANNLTGVTASIPLGTFTCIT 663

Query: 639 GVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRS 698
           GVSGSGKS+   DT +  +   LNGA      P+  I GLE+ DKVIDIDQSPIGRTPRS
Sbjct: 664 GVSGSGKSSFTIDTLYAASARTLNGARIVA-GPHDKITGLENCDKVIDIDQSPIGRTPRS 722

Query: 699 NPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDV 758
           NPATYTG FT IR+ FAG  E+++RGY+PGRFSFNV+GGRCEACQGDGV+K+EMHFLPDV
Sbjct: 723 NPATYTGAFTNIRDWFAGLPEAQARGYKPGRFSFNVKGGRCEACQGDGVLKIEMHFLPDV 782

Query: 759 YVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLS 818
           YV CDVC G RYNRETLEV++KG +I ++LDMTVEDA EFF  VP I  K+  L +VGL 
Sbjct: 783 YVTCDVCHGARYNRETLEVKFKGMSIADILDMTVEDAVEFFKAVPPIRDKMAMLAEVGLG 842

Query: 819 YIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLR 878
           YI++GQ ATTLSGGEAQRVKLA+ELS+R TG TLYILDEPTTGLHF D+++LL VLH L 
Sbjct: 843 YIKVGQQATTLSGGEAQRVKLAKELSRRATGNTLYILDEPTTGLHFEDVRKLLEVLHALV 902

Query: 879 DHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPL 938
           + GN+VVVIEHNLDVIKTAD+IID+GPEGG  GG ++A+GTPE V + + S T R+L PL
Sbjct: 903 EQGNSVVVIEHNLDVIKTADYIIDMGPEGGVKGGEVVAQGTPEQVVKEKRSFTGRYLAPL 962

Query: 939 L 939
           L
Sbjct: 963 L 963



 Score = 57.0 bits (136), Expect = 6e-12
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 7/115 (6%)

Query: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           K+ V  AR +NL  +  +IP      ITG+SGSGKSS   DTLYA   R    +L+  AR
Sbjct: 636 KLTVHNARANNLTGVTASIPLGTFTCITGVSGSGKSSFTIDTLYAASAR----TLNG-AR 690

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGE 117
                 +K  +  +E     I I+Q      PRS   T T  +  +R  +A + E
Sbjct: 691 IVAGPHDK--ITGLENCDKVIDIDQSPIGRTPRSNPATYTGAFTNIRDWFAGLPE 743