Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 851 a.a., excinuclease ABC subunit A from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  500 bits (1288), Expect = e-145
 Identities = 289/707 (40%), Positives = 408/707 (57%), Gaps = 39/707 (5%)

Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
           FS N   GACP C GLG         ++ D +L++ + AI  W     +  Q    +   
Sbjct: 143 FSPNTAEGACPACHGLGRIYEVTEKSMVPDDSLTIRERAIAAWPTA--WGGQNQRDILVT 200

Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
             +DV  P+ +L +K ++ IL    +  +     +     R  ++ K+ P     F    
Sbjct: 201 LGYDVDRPWRELPQKERDWILFTDEQPVVPVYPGYTPEQTRRALQRKEEPSYMGTFSSAR 260

Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFI---NDTALPTIVELS 434
            ++   + +T S  +++ + +++ +  C +C G RL+ E+ +V     + T L  +    
Sbjct: 261 RHVFHTFANTNSAQMKKRVMQFMLSTDCPNCQGKRLRPESLSVTFAGYDITELSRLPLKR 320

Query: 435 IADALTFFQELKLEG---------QRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAET 485
           IA  L  + E    G         ++A +A+++ +++  RL  L+++GL YL+L RS  T
Sbjct: 321 IASILVPYAEGTATGRTEQAAAHPEQALVAQRIAQDLVARLHVLLDLGLGYLSLERSTPT 380

Query: 486 LSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEH 545
           LS GE QR+RLA+Q+ + L GV+YVLDEPS GLH  D   LL+ L  L+  GN++ VVEH
Sbjct: 381 LSPGELQRLRLATQLYSHLFGVVYVLDEPSAGLHPSDTLALLKALEGLKKAGNSLFVVEH 440

Query: 546 DEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTP 605
           + D IR AD ++D+GP AG  GG V+  G  E +     S T  YL G   + V   R P
Sbjct: 441 NLDVIRHADWLVDVGPNAGEKGGEVLYSGTPEGLQQVAASHTAHYLFGSAALPV---RAP 497

Query: 606 KDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN--- 662
           +     + L G   NNL++++   P+G+FT VTG+SGSGKS+L++    ++    L    
Sbjct: 498 RHPSGWLRLSGVTRNNLQDLEAEFPLGVFTTVTGISGSGKSSLVSQALVELVSEQLGQAM 557

Query: 663 ------GATTATPAPYRS----IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRE 712
                 G       P +S     +G+    +++ +DQ PIGRTPRSN ATYTG+F  +R+
Sbjct: 558 PTEEEEGEPLERAEPEKSGGQITEGMASIKRLVRVDQKPIGRTPRSNMATYTGLFDHVRK 617

Query: 713 LFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNR 772
           LFA T  +R+R Y  GRFSFNV  GRCE CQG+G + VE+ FLP VY PC VC G RYN 
Sbjct: 618 LFAATDMARARKYDAGRFSFNVAKGRCENCQGEGFVMVELLFLPSVYAPCPVCHGARYNA 677

Query: 773 ETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGG 832
           ETLEV Y+GK I EVL MTV+ A EFF   P + R L  L +VGL Y+RLGQ AT LSGG
Sbjct: 678 ETLEVTYRGKNIAEVLAMTVDTAWEFFGEEPPVHRALTVLREVGLGYLRLGQPATELSGG 737

Query: 833 EAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLD 892
           EAQR+KLA EL +   G TLY+LDEPTTGLH  D+++L+  L  L + GNTV+V+EH + 
Sbjct: 738 EAQRIKLATELQRAQRGNTLYVLDEPTTGLHPADVEKLMVQLDNLVEAGNTVIVVEHTMR 797

Query: 893 VIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           V+  +DW+ID+GP  G+ GG I+A GTPE VA    S TA FLK LL
Sbjct: 798 VVAGSDWVIDVGPGAGEEGGKIVAAGTPEQVANAAESKTAPFLKRLL 844



 Score =  139 bits (349), Expect = 1e-36
 Identities = 66/114 (57%), Positives = 90/114 (78%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + VRGAR HNLKN++LTIPRD L+V TG+SGSGKSSLAF TLYAE QRRY+ES+S YAR+
Sbjct: 17  VTVRGAREHNLKNLDLTIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYLESVSPYARR 76

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGE 117
               M  P+VD IEGL PA++++Q+  +   RS+VG++T + + +R+LY+R G+
Sbjct: 77  LFHQMAVPEVDSIEGLPPAVALQQQRGTATTRSSVGSVTTLSNLVRMLYSRAGD 130



 Score = 60.8 bits (146), Expect = 3e-13
 Identities = 53/171 (30%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 604 TPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNG 663
           T K     V ++GA  +NLKN+DL+IP       TGVSGSGKS+L   T +  A      
Sbjct: 9   TAKQFSGFVTVRGAREHNLKNLDLTIPRDALVVFTGVSGSGKSSLAFGTLY--AEAQRRY 66

Query: 664 ATTATPAPYR--------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
             + +P   R         +  +E     + + Q     T RS+  + T +   +R L+ 
Sbjct: 67  LESVSPYARRLFHQMAVPEVDSIEGLPPAVALQQQRGTATTRSSVGSVTTLSNLVRMLY- 125

Query: 716 GTQESRSRGYQPGR-------FSFNVRGGRCEACQGDGVI--KVEMHFLPD 757
               SR+  Y PG+       FS N   G C AC G G I    E   +PD
Sbjct: 126 ----SRAGDYPPGQPIIYAEAFSPNTAEGACPACHGLGRIYEVTEKSMVPD 172



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           + + G   +NL+++    P      +TG+SGSGKSSL    L      +  +++     +
Sbjct: 504 LRLSGVTRNNLQDLEAEFPLGVFTTVTGISGSGKSSLVSQALVELVSEQLGQAMPTEEEE 563

Query: 64  FLSL----MEKPDVDHIEGLSP---AISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG 116
              L     EK      EG++     + ++QK     PRS + T T ++D++R L+A   
Sbjct: 564 GEPLERAEPEKSGGQITEGMASIKRLVRVDQKPIGRTPRSNMATYTGLFDHVRKLFAATD 623

Query: 117 EPRCPEH 123
             R  ++
Sbjct: 624 MARARKY 630