Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 1040 a.a., Excinuclease ABC subunit A from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1207 bits (3123), Expect = 0.0
 Identities = 609/996 (61%), Positives = 752/996 (75%), Gaps = 61/996 (6%)

Query: 4    IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
            + VRGARTHNLKNI+L IP+  L+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ
Sbjct: 44   LSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 103

Query: 64   FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
            FL LM+KPDVD IEGLSPAI+IEQK+TSHNPRSTVGT+TE++DYLRLL+AR G P CP+H
Sbjct: 104  FLQLMDKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPHCPDH 163

Query: 124  QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
             +PL +Q+++QMVD VL LPEG+++M+LA + +E+KGE  +   ++ AQG++R R+DG  
Sbjct: 164  HLPLTSQSVAQMVDTVLALPEGTRLMILAPVAREKKGEFTELFADMQAQGYVRFRVDGAV 223

Query: 184  CDLTDPPKLELHKKHTIEVIVDRFKVRSD--------LQQRLAESFETALELSGGIVVVA 235
             +    P L+  +KH I+V++DR KVR+D        L+QRLAESFE AL L+ G  +  
Sbjct: 224  LEAEALPALKKTEKHNIDVVIDRIKVRADGEEEGVNPLRQRLAESFEAALRLADGRAIAV 283

Query: 236  PMEGDG-----EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDP 290
             M+         E  FSA FACP C Y++ ELEPRLFSFN+P GACPTCDGLG  ++FDP
Sbjct: 284  EMDAAEAGAAPREHGFSARFACPLCHYTVGELEPRLFSFNSPMGACPTCDGLGHTEFFDP 343

Query: 291  DRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGS 350
             RV+   +LSLA GAI+GWD++N YYF M+ +LA HY F+   P+  L   +Q+++L+GS
Sbjct: 344  ARVVAFPSLSLASGAIKGWDRRNGYYFAMIESLAAHYRFNAEAPWESLPDAVQQVLLYGS 403

Query: 351  GRTEIEFKYINDRGDIR----LKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCS 406
            G  E++F Y  + G+       KKHPFEGI+ N ERRYR+T+S +VREELA+Y + + C 
Sbjct: 404  GEDEVKFSYALESGERAGKKVSKKHPFEGIVRNFERRYRETDSAAVREELARYRAVQACP 463

Query: 407  SCDGTRLKIEARNVFIND----TALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEI 462
             C G+RL+ EAR+VF+ +      +  I  +++ +AL +FQ+L+L G +  IA +V+ EI
Sbjct: 464  ECAGSRLRREARHVFVGEGEQKQPIYKISHVTLGEALAYFQKLELHGAKGDIAARVINEI 523

Query: 463  NDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRD 522
              RL+FL +VGLNYL+L RSAETLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRD
Sbjct: 524  RQRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRD 583

Query: 523  NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            N+RL+ TL HLR+LGNTVLVVEHDED IR ADHVID+GPGAGVHGG V+A+G  E+++A 
Sbjct: 584  NDRLIATLQHLRDLGNTVLVVEHDEDMIRTADHVIDMGPGAGVHGGRVMAQGTCEQVMAT 643

Query: 583  PNSLTGQYLSGVKKIAVPEQRTP-------KDAKKTVELK-------------------- 615
            P+SLTGQYL G ++IAVP +RTP        +A K    K                    
Sbjct: 644  PDSLTGQYLGGTRQIAVPARRTPWLPVVKKGEAPKAAPTKPRFPPSPAAERRAAREAAHQ 703

Query: 616  ------------GAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNG 663
                         A G+NLK   ++ PVGL TCVTGVSGSGKSTL+NDT +      L  
Sbjct: 704  ATLGELQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVARTLYR 763

Query: 664  ATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSR 723
            +    PA + +I+G+EHFDKVI++DQSPIGRTPRSNPATYTG+FT IREL A    +R R
Sbjct: 764  SHDE-PAAHDAIEGIEHFDKVINVDQSPIGRTPRSNPATYTGLFTGIRELMAEMPTARER 822

Query: 724  GYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKT 783
            GY PGRFSFNV GGRCEACQGDGV+KVEMHFLPDVYVPC+VC G+RYNRETL+V+YKG+ 
Sbjct: 823  GYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLDVQYKGRN 882

Query: 784  IDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAREL 843
            I ++LDMTVE +  FF  VP + RKLQTL+DVGLSYI+LGQSATTLSGGEAQRVKLA EL
Sbjct: 883  IAQILDMTVEQSHAFFSAVPTLHRKLQTLLDVGLSYIQLGQSATTLSGGEAQRVKLALEL 942

Query: 844  SKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDL 903
            SKRDTG+TLYILDEPTTGLHF DI+ LL VLH+LRD GNT+VVIEHNLDVIKTADW+ID+
Sbjct: 943  SKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWVIDM 1002

Query: 904  GPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
            GPEGG GGG ++A+GTPE +A    SHT R+L+ LL
Sbjct: 1003 GPEGGSGGGTVVAQGTPETIAAHPDSHTGRYLRRLL 1038



 Score = 60.8 bits (146), Expect = 4e-13
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           + +I V  AR HNLK  ++  P   L  +TG+SGSGKS+L  DTLYA   R    S    
Sbjct: 709 LQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYAAVARTLYRSHDEP 768

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPR 119
           A           ++ IE     I+++Q      PRS   T T ++  +R L A +   R
Sbjct: 769 AAH-------DAIEGIEHFDKVINVDQSPIGRTPRSNPATYTGLFTGIRELMAEMPTAR 820



 Score = 57.0 bits (136), Expect = 6e-12
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 606 KDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGAT 665
           + A   + ++GA  +NLKN+DL IP      +TG+SGSGKS+L  DT +         + 
Sbjct: 38  RHASAFLSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSLAFDTLYAEGQRRYVESL 97

Query: 666 TATPAPYRSIQG------LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
           +A    +  +        +E     I I+Q      PRS   T T I   +R LFA
Sbjct: 98  SAYARQFLQLMDKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFA 153