Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1959 a.a., Excinuclease ABC subunit A, dimeric form from Hydrogenophaga sp. GW460-11-11-14-LB1
Score = 615 bits (1587), Expect = e-180
Identities = 397/1009 (39%), Positives = 551/1009 (54%), Gaps = 92/1009 (9%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I +RGAR HNLKN++L I +L V+TG SGSGKSSL FDTL+AEGQRRYVE+ SAYARQ
Sbjct: 35 IRIRGARQHNLKNLDLDIRTGELTVVTGPSGSGKSSLVFDTLFAEGQRRYVETFSAYARQ 94
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
FL M+KP VD ++G+ PAI+I+Q + + RSTVGT+TE+ D+L+LL+AR + E
Sbjct: 95 FLDRMDKPAVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARGADLFDRET 154
Query: 124 QVPLKAQTISQMVD--KVLELPEGSKMMLLATIVKERKGEHVKTLEN-LAAQGFIRARID 180
P++ + + K +G ++L V+ + +E L+A G+ R + +
Sbjct: 155 AQPVRHDSPESIYAELKARAARQGDPRLVLTFPVELPASTTAEEVEQWLSASGYTRVQAE 214
Query: 181 G-------ETCDLTDPPK-----LELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELS 228
T + P K + ++V+ DRF++ + R E+ E L+
Sbjct: 215 RVVQREVVATVEAKAPAKGKAKPVASESVKVLDVVADRFRIGTVEPARAMEAIEAGLKRG 274
Query: 229 GGIVVVAPMEGDGEEQI--FSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQ 286
GG ++V + +GE +I FS CP E P +FSFN+ GAC C G G
Sbjct: 275 GGKLMVYVLAEEGEPEIWRFSTGLHCPESDIRYSEPTPSMFSFNSAVGACEACRGFGRVI 334
Query: 287 YFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQ-MLTALAEHYDFDVHTPFNKLSKKIQEI 345
D VI + L+L GA++ + + Q + AE TP+ KL+ + Q
Sbjct: 335 GVDYGLVIPNDKLTLRAGAVKVFQTPAWKECQDDMMRHAEAAGIPRDTPWAKLTPEQQHW 394
Query: 346 ILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPC 405
+ GS + ++ + G+ E +R L+KY S C
Sbjct: 395 VKAGSPQWNGKW------------NQQWYGVDRFFEYLESKAYKMHIRVLLSKYRSYTEC 442
Query: 406 SSCDGTRLKIEARNVFINDTA------------LPTIVELSIA--DAL------------ 439
SC G RLK ++ I A LP V+ S A +AL
Sbjct: 443 PSCHGARLKTDSLLWRIGSKAQADAVLPAPKRYLPQGVKWSRAQLEALPGLCLHDLMLMP 502
Query: 440 -----TFFQEL----------KLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAE 484
FF L +AQ + +EIN R+++L VG+ YL L R +
Sbjct: 503 LDKLRVFFASLDATLAPAGSDTAAAGQAQALRLLFEEINTRIRYLCEVGIGYLTLDRQSR 562
Query: 485 TLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVE 544
TLSGGE QRI L + +G LV ++VLDEPSIGLH RD R+ + LR+ GNT++VVE
Sbjct: 563 TLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPRDMARINDAMLRLRDAGNTLVVVE 622
Query: 545 HDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRT 604
HD + AD +ID+GPG G GG +V +G E I + ++LTG YL K I + +R
Sbjct: 623 HDPAVMLAADRLIDMGPGPGERGGSIVFDG-TPEAIRSADTLTGAYLGSRKTIGMGFKRM 681
Query: 605 PKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN-- 662
D+ + L+GA +NLK+V + P+ VTGVSGSGKS+LI D +A L
Sbjct: 682 VTDSTPRLILEGAREHNLKDVSVEFPLQRLVVVTGVSGSGKSSLIQDV---LAPALLRHF 738
Query: 663 GATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRS 722
G +T +P + + G +H +V+ +DQSPIG+T RSNP +Y G + IR LFA SR
Sbjct: 739 GKSTESPGAHDRLLGADHLSEVVFVDQSPIGKTARSNPVSYVGAWDAIRALFAEAPLSRQ 798
Query: 723 RGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYK-- 780
R Y P +FSFN GRC C G G VEM FL DVY+ C C GKRY E LEV+ +
Sbjct: 799 RSYTPAKFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGKRYRPEILEVKIQRG 858
Query: 781 GKTID--EVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
G++++ +VLD+TV +A F + R LQ ++DVGL Y++LGQ TLSGGEAQR+K
Sbjct: 859 GRSLNVADVLDLTVSEAAALFAGDREVIRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLK 918
Query: 839 LA---RELSKRDTGK--------TLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVI 887
LA E SK + TL++ DEPTTGLHF DI +L+ L +L D G+++VVI
Sbjct: 919 LAGFLAEASKNSSASRQAVARKGTLFLFDEPTTGLHFDDIAKLMRSLRKLLDAGHSLVVI 978
Query: 888 EHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
EHNLDVI+ ADW+IDLGPEGG GGLI+AEG PE V + +SHTA+ L+
Sbjct: 979 EHNLDVIRAADWLIDLGPEGGDAGGLIVAEGPPEAVREHASSHTAKALR 1027
Score = 525 bits (1352), Expect = e-152
Identities = 284/566 (50%), Positives = 372/566 (65%), Gaps = 29/566 (5%)
Query: 402 NKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQ----ELKLEGQRAQIAEK 457
++ C +C GTRL +AR V + + LS+ D T+ Q +L L + A IA
Sbjct: 1392 DEACPACAGTRLNPQARAVRFAGVGITDVACLSVRDVRTWVQGLMKDLALSAREADIARD 1451
Query: 458 VMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIG 517
++ EI RL FL VGLNYL L R A TLSGGEAQRIRLA+Q+G+ L GV YVLDEP+IG
Sbjct: 1452 LLPEIESRLAFLEEVGLNYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIG 1511
Query: 518 LHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVE 577
LH RDN LL L L + GNT++VVEHDED IR ADH+IDIGP AG GG VVA+G+V+
Sbjct: 1512 LHARDNAILLNALHKLGDQGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRVVAQGSVD 1571
Query: 578 EIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKT---VELKGAVGNNLKNVDLSIPVGLF 634
++ AN +S+TG+YL K + +R A + + +KGA +NL +D ++P+
Sbjct: 1572 DLSANADSVTGRYLLHAMKHPLQARRGAPPADEGAHWLRVKGANLHNLNELDAAVPLQRL 1631
Query: 635 TCVTGVSGSGKSTLINDTFFKIAHTALNGATTAT----------PA--PYRSIQGLEHFD 682
+TGVSGSGKSTL D A++ +T PA + G E D
Sbjct: 1632 VVITGVSGSGKSTLARDVLLTNVAAAVSQRSTKAGRDAMDKGKYPAWSGCAGVSGFETVD 1691
Query: 683 KVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEAC 742
+V+++DQ+PIG+TPRS PATY G + +R+LFA T E+++RGY PGRFSFN GRC AC
Sbjct: 1692 RVLEVDQTPIGKTPRSCPATYIGFWDTVRKLFADTLEAKARGYGPGRFSFNTGEGRCPAC 1751
Query: 743 QGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPV 802
+G G+ +EM FLPDV VPC+VC G R+N ETL V +KGK+I +VL M V++A +FF +
Sbjct: 1752 EGQGMRTIEMSFLPDVKVPCEVCHGARFNPETLAVTWKGKSIGDVLQMEVDEAVDFFASM 1811
Query: 803 PVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSK---------RDTGKTLY 853
P I+ LQ L DVGL Y+ LGQ + TLSGGEAQR+KL ELSK + TLY
Sbjct: 1812 PNISHPLQLLKDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDVTRRGQKAPHTLY 1871
Query: 854 ILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGL 913
+LDEPT GLH D+++L+ VLHRL D G++VVVIEH+LDV+ ADWIIDLGPEGG GGG
Sbjct: 1872 VLDEPTVGLHMADVEKLIRVLHRLVDGGHSVVVIEHDLDVMAEADWIIDLGPEGGNGGGR 1931
Query: 914 IIAEGTPEDVAQIEASHTARFLKPLL 939
I+A P++V ++ +HT R L P+L
Sbjct: 1932 IVAAAPPDEVVRL-GTHTGRVLGPVL 1956
Score = 219 bits (557), Expect = 2e-60
Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 14/308 (4%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I + A+ HNLKN+++ IPR K VI+G+SGSGKS+LAFD L+ EGQRRY+ESL+AYAR
Sbjct: 1062 IRIVNAKEHNLKNLSVDIPRGKFNVISGVSGSGKSTLAFDILFNEGQRRYLESLNAYARS 1121
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
+ +P+VD + G+ P ++IEQ+ + +STVGT TEV+ +LRLLY ++G C
Sbjct: 1122 IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVGTTTEVWHFLRLLYVKLGTQHCVHD 1181
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
+ Q+ + +L +G + LLA +V RKG + + + +G R+DGE
Sbjct: 1182 GAAVMPQSADSIAAAILARYKGRHIGLLAPLVVNRKGVYTELADWARPRGHTHLRVDGEF 1241
Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIV-VVAPMEG--- 239
T P+++ K+HTIE+ V F V +D + L ALE+ G+V V+ P++G
Sbjct: 1242 LPTTGFPRIDRFKEHTIELPVADFVVSADDEAALRRELNKALEIGKGVVHVLTPLDGLAQ 1301
Query: 240 ----------DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFD 289
G ++FS ACP C S EL+PRLFS+N+ G CP C G GV+ D
Sbjct: 1302 ALAEGVSTRDLGTLEVFSTTRACPICATSYPELDPRLFSYNSKHGWCPDCVGTGVKLSKD 1361
Query: 290 PDRVIQDA 297
+ + D+
Sbjct: 1362 QRKALDDS 1369
Score = 145 bits (365), Expect = 3e-38
Identities = 93/251 (37%), Positives = 128/251 (50%), Gaps = 43/251 (17%)
Query: 727 PGRFSFNVRGGRCEACQGDGV--IKVEMHFLPD----------------------VYVPC 762
P FS+N + G C C G GV K + L D V C
Sbjct: 1336 PRLFSYNSKHGWCPDCVGTGVKLSKDQRKALDDSVRDDKEKGREQSFAEPEVDDLVDEAC 1395
Query: 763 DVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFF------------------DPVPV 804
C G R N + VR+ G I +V ++V D R + D +P
Sbjct: 1396 PACAGTRLNPQARAVRFAGVGITDVACLSVRDVRTWVQGLMKDLALSAREADIARDLLPE 1455
Query: 805 IARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHF 864
I +L L +VGL+Y+ L + A TLSGGEAQR++LA +L G Y+LDEPT GLH
Sbjct: 1456 IESRLAFLEEVGLNYLTLDRGAPTLSGGEAQRIRLAAQLGSNLQG-VCYVLDEPTIGLHA 1514
Query: 865 HDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVA 924
D LL+ LH+L D GNT+VV+EH+ D I+ AD IID+GP G+ GG ++A+G+ +D++
Sbjct: 1515 RDNAILLNALHKLGDQGNTLVVVEHDEDTIRRADHIIDIGPSAGKRGGRVVAQGSVDDLS 1574
Query: 925 QIEASHTARFL 935
S T R+L
Sbjct: 1575 ANADSVTGRYL 1585
Score = 133 bits (335), Expect = 1e-34
Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 47/282 (16%)
Query: 405 CSSCDGTRLKIEARNVFIN----DTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMK 460
C CDG R + E V I + +++L++++A F G R
Sbjct: 838 CPDCDGKRYRPEILEVKIQRGGRSLNVADVLDLTVSEAAALFA-----GDR--------- 883
Query: 461 EINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLA------------SQIGAGLVGVM 508
E+ LQ +V+VGL Y+ L + TLSGGEAQR++LA S+ G +
Sbjct: 884 EVIRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEASKNSSASRQAVARKGTL 943
Query: 509 YVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGG 568
++ DEP+ GLH D +L+++L L + G++++V+EH+ D IR AD +ID+GP G GG
Sbjct: 944 FLFDEPTTGLHFDDIAKLMRSLRKLLDAGHSLVVIEHNLDVIRAADWLIDLGPEGGDAGG 1003
Query: 569 MVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKK----------------TV 612
++VAEG E + + +S T + L +A+ E ++ + +
Sbjct: 1004 LIVAEGPPEAVREHASSHTAKALREYA-LAMGEVHEVREGRPMGLQPARARAEGAHAHAI 1062
Query: 613 ELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF 654
+ A +NLKN+ + IP G F ++GVSGSGKSTL D F
Sbjct: 1063 RIVNAKEHNLKNLSVDIPRGKFNVISGVSGSGKSTLAFDILF 1104
Score = 59.3 bits (142), Expect = 2e-12
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ V+GA HNL ++ +P +L+VITG+SGSGKS+LA D L + + R
Sbjct: 1609 LRVKGANLHNLNELDAAVPLQRLVVITGVSGSGKSTLARDVLLTNVAAAVSQRSTKAGRD 1668
Query: 64 FLSLMEKP------DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA---- 113
+ + P V E + + ++Q PRS T +D +R L+A
Sbjct: 1669 AMDKGKYPAWSGCAGVSGFETVDRVLEVDQTPIGKTPRSCPATYIGFWDTVRKLFADTLE 1728
Query: 114 -------------RVGEPRCP 121
GE RCP
Sbjct: 1729 AKARGYGPGRFSFNTGEGRCP 1749
Score = 57.4 bits (137), Expect = 9e-12
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRY---VESLSA 59
++ + GAR HNLK++++ P +L+V+TG+SGSGKSSL D L R + ES A
Sbjct: 688 RLILEGAREHNLKDVSVEFPLQRLVVVTGVSGSGKSSLIQDVLAPALLRHFGKSTESPGA 747
Query: 60 YARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
+ R DH LS + ++Q RS + +D +R L+A
Sbjct: 748 HDRLL-------GADH---LSEVVFVDQSPIGKTARSNPVSYVGAWDAIRALFA 791
Score = 30.8 bits (68), Expect = 0.001
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 264 PRLFSFNNPAGACPTCDGLG---VQQYFDPD 291
P FSFN G CP C+G G ++ F PD
Sbjct: 1736 PGRFSFNTGEGRCPACEGQGMRTIEMSFLPD 1766