Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score = 1148 bits (2969), Expect = 0.0
 Identities = 576/939 (61%), Positives = 719/939 (76%), Gaps = 7/939 (0%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I VRGAR HNLKNI++ +PRDKL+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL LM+KPDV+ IEGLSPAISIEQK+TS NPRSTVGT+TE+YDY+RLL+ARVG P  P  
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
            +P+++QT+SQMVD+V  + EG+++ LLA  V+ RKGE+ K L  L  +GF R ++DG  
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQKKGFQRVKVDGTL 184

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDGEE 243
            ++ + P+L+  KKH IEV+VDR  V+  L  RLA+S ETAL L+ G+ +    E  GE 
Sbjct: 185 YEIDEVPQLDKKKKHDIEVVVDRLVVKPGLGNRLADSIETALSLADGLAIAENAE-TGER 243

Query: 244 QIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQ 303
            +FSA FACP  G+++ E+EPRLFSFNNP GACP CDGLGV+ YFDP+ VI +  LSL +
Sbjct: 244 TVFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLRE 303

Query: 304 GAIRGW-DQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYIND 362
           GAI  W    + YY Q L  LAEHY F + TP+ KL ++ +E+ILHGSG  EI   Y + 
Sbjct: 304 GAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNEEIRIAYEDG 363

Query: 363 RGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFI 422
                 +K  FEG++ N+ RRYR+T+S+ +RE+L+++    PC +C G RLK EA  V +
Sbjct: 364 FRGYHTEKS-FEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAVKV 422

Query: 423 NDTALPTIVELSIADALTFFQELK--LEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS 480
               +    E SI +A  +F +L   L  +  +IA ++++EINDRL FLV+VGL YL + 
Sbjct: 423 RGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLTMG 482

Query: 481 RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTV 540
           R + +LSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL  LR++GNTV
Sbjct: 483 RGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGNTV 542

Query: 541 LVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP 600
           +VVEHDEDAIR AD+++D+GPGAG+HGG VV+EG   +++A+PNS+TG+YL+G   I +P
Sbjct: 543 IVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIPLP 602

Query: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTA 660
             R P + K+ + L GA GNNLKNVD  IP+G  TCVTGVSG GKSTL+ +T +K     
Sbjct: 603 ALRRPGNGKR-LSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALSRR 661

Query: 661 LNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQES 720
           L GA    P+P+  I G+E+ DK+IDIDQSPIGRTPRSNPATYTG F+PIR+ F    ES
Sbjct: 662 LMGAREQ-PSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELPES 720

Query: 721 RSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYK 780
           + RGY+PGRFSFNV+GGRCEACQGDGVIK+EMHFLPDVYV CDVCKGKRYNRETLE+ ++
Sbjct: 721 KVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGKRYNRETLEITFR 780

Query: 781 GKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLA 840
           GK+I +VLDMTVE+A +FF  VP I  K+ TL  VGL YI LGQ ATTLSGGEAQRVKLA
Sbjct: 781 GKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQATTLSGGEAQRVKLA 840

Query: 841 RELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWI 900
           +ELSKR TG+TLYILDEPTTGLHF D+++LL V+  L D GNTV+VIEHNL+VIKTADWI
Sbjct: 841 KELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIEHNLEVIKTADWI 900

Query: 901 IDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           +DLGPEGG GGG I+A GTPEDVA    S+T  +L P+L
Sbjct: 901 VDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPIL 939



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           ++ + GAR +NLKN++  IP   L  +TG+SG GKS+L  +TLY            A +R
Sbjct: 612 RLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALSR 660

Query: 63  QFLSLMEKPD----VDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEP 118
           + +   E+P     +D +E L   I I+Q      PRS   T T  +  +R  +  + E 
Sbjct: 661 RLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELPES 720

Query: 119 R 119
           +
Sbjct: 721 K 721