Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., Excinuclease ABC subunit A from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1563 bits (4046), Expect = 0.0
 Identities = 766/940 (81%), Positives = 849/940 (90%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIEVRGARTHNLKNINL IPRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE++DYLRLL+ARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P+H VPL AQT+SQMVD VL  PEG ++MLLA I+KERKGEH KTLENLA+QG+IRARID
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           GE CDL+DPPKLEL KKHTIEV++DRFKVR+DL QRLAESFETALELSGG  VVA M+ +
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVIDRFKVRNDLSQRLAESFETALELSGGTAVVADMDDE 240

Query: 241 -GEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
             EE +FSANFACP CGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQ+ +L
Sbjct: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPDL 300

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           SLA GAIRGWD++NFYYFQML +LAEHY FDV  P+  LS  + +++L+GSG+  IEFKY
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDAPWASLSANVHKVVLYGSGKENIEFKY 360

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           +NDRGD  +++HPFEG+LHN+ERRY++TES++VREELAK+ISN+PC+SC+GTRL  EAR+
Sbjct: 361 MNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLNREARH 420

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           VF+ +T LP I ++SI  A+ FF  LKL GQRA+IAEKV+KEI DRL+FLVNVGLNYL L
Sbjct: 421 VFVENTPLPAISDMSIGHAMDFFTNLKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLTL 480

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TL HLRNLGNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNT 540

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR ADHVIDIGPGAGVHGG VVAEG +E I+A P SLTGQY+SG +KI V
Sbjct: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P+QR P + +K ++L GA GNNLK+V L++PVGLFTC+TGVSGSGKSTLINDT F IA  
Sbjct: 601 PKQRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
            LNGAT A PAPYR IQGLEHFDKVIDIDQSPIGRTPRSNPATYTG+FTP+RELFAG  E
Sbjct: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE 720

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           SRSRGY PGRFSFNVRGGRCEACQGDGVIKVEMHFLPD+YVPCD CKGKRYNRETLE++Y
Sbjct: 721 SRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGKTI EVLDMT+E+AREFFD VP +ARKLQTLMDVGL+YIRLGQSATTLSGGEAQRVKL
Sbjct: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           ARELSKR TG+TLYILDEPTTGLHF DIQQLL VLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADW 900

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           I+DLGPEGG GGG I+  GTPE VA+ EASHTARFLKP+L
Sbjct: 901 IVDLGPEGGSGGGEILVAGTPETVAECEASHTARFLKPML 940



 Score =  125 bits (314), Expect = 1e-32
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 15/194 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   +      +  +++++I +A  FF                +  + 
Sbjct: 762 PCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFD--------------AVPALA 807

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +LQ L++VGL Y+ L +SA TLSGGEAQR++LA ++     G  +Y+LDEP+ GLH  D
Sbjct: 808 RKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            ++LL  L  LR+ GNT++V+EH+ D I+ AD ++D+GP  G  GG ++  G  E +   
Sbjct: 868 IQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVAGTPETVAEC 927

Query: 583 PNSLTGQYLSGVKK 596
             S T ++L  + K
Sbjct: 928 EASHTARFLKPMLK 941