Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., excinuclease ABC, A subunit from Kangiella aquimarina DSM 16071

 Score = 1445 bits (3740), Expect = 0.0
 Identities = 701/941 (74%), Positives = 821/941 (87%), Gaps = 3/941 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MD I++RGA+THNLKNI+L +PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDNIDIRGAKTHNLKNIDLVLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLSLMEKPDV+HIEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLL+ARVG P C
Sbjct: 61  ARQFLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGTPHC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           P H +PL+AQTISQMVD VLE PEG+K++LLA ++K RKGEH++ L+ L A+GF+RARI+
Sbjct: 121 PTHHLPLEAQTISQMVDHVLEQPEGTKLLLLAPVIKNRKGEHIQLLQELQAKGFVRARIN 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGD 240
           GE  DL++ P +ELHKKHTIEVIVDRFKV+SDLQQRLAESFETALELS GI  VAPM+ D
Sbjct: 181 GEVYDLSEAPTMELHKKHTIEVIVDRFKVKSDLQQRLAESFETALELSDGIARVAPMDED 240

Query: 241 G--EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDAN 298
              EE +FSA +ACP CG+S+ ELEPR+FSFNNPAGACPTCDGLG+ Q+FDPD++I + +
Sbjct: 241 SDLEEMVFSAKYACPTCGHSISELEPRIFSFNNPAGACPTCDGLGIDQFFDPDKIITNED 300

Query: 299 LSLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFK 358
           +SLA GAIRGWD++N YYF ML +LA+HY FD+  P++ LSKKIQ+++L+GSG+T+I+F+
Sbjct: 301 ISLAGGAIRGWDRRNVYYFHMLKSLAKHYKFDIEAPWSSLSKKIQDVVLYGSGKTQIDFE 360

Query: 359 YINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEAR 418
           Y NDRGD   +KH FEGI+ N++RRY +TES +VREEL KY++ + C +C GTRL  ++R
Sbjct: 361 YSNDRGDKYQRKHRFEGIIPNMQRRYHETESGAVREELQKYMTTQSCKACGGTRLNEDSR 420

Query: 419 NVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLN 478
           NVFI+ T+LP +   SI  A  +F  L L G+R +IA KV+KEI +RL FLVNVGL+YL 
Sbjct: 421 NVFIDGTSLPQVTHWSIEQAHDYFSTLNLPGKRGEIASKVLKEIGERLSFLVNVGLDYLT 480

Query: 479 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGN 538
           L RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLLQTLTHLR+LGN
Sbjct: 481 LERSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLQTLTHLRDLGN 540

Query: 539 TVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIA 598
           TV+VVEHDEDAIR AD ++DIGPGAGVHGG +VA+G + +I     SLT QYL+G  KI 
Sbjct: 541 TVIVVEHDEDAIRAADFIVDIGPGAGVHGGEIVAKGTLADIKKAKGSLTAQYLTGKLKIE 600

Query: 599 VPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH 658
           VPE+RTP DAKKT+++ GA GNNL +VDL IPVGL TC+TGVSGSGKSTLINDT + I  
Sbjct: 601 VPEKRTPVDAKKTIKVLGATGNNLNDVDLEIPVGLLTCITGVSGSGKSTLINDTLYPIVA 660

Query: 659 TALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 718
             +N  ++  P PY+ IQGL++ DKV+DIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ
Sbjct: 661 RDIN-RSSLQPKPYKEIQGLDNIDKVVDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 719

Query: 719 ESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVR 778
           ESR+RGY+PGRFSFNV+GGRCEACQGDGVIKVEMHFLPDVYV CDVCKGKRYNRETLE+ 
Sbjct: 720 ESRTRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVACDVCKGKRYNRETLEIL 779

Query: 779 YKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
           YKGK I+EVLD+TVEDAREFFD +P +ARKLQTL+DVGLSYI LGQ+ATTLSGGEAQRVK
Sbjct: 780 YKGKNINEVLDLTVEDAREFFDAIPAVARKLQTLIDVGLSYITLGQAATTLSGGEAQRVK 839

Query: 839 LARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           L+RELSKRDTG+TLYILDEPTTGLHFHD+ QLL VLHRLRDHGNTVVVIEHNLDVIKTAD
Sbjct: 840 LSRELSKRDTGQTLYILDEPTTGLHFHDVNQLLKVLHRLRDHGNTVVVIEHNLDVIKTAD 899

Query: 899 WIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           WI+DLGPEGG  GG IIA GTPEDVA+I+ S+T ++LKP+L
Sbjct: 900 WIVDLGPEGGSKGGQIIATGTPEDVAKIKKSYTGKYLKPML 940



 Score =  133 bits (335), Expect = 5e-35
 Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 15/193 (7%)

Query: 405 CSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIND 464
           C  C G R   E   +      +  +++L++ DA  FF  +    ++             
Sbjct: 763 CDVCKGKRYNRETLEILYKGKNINEVLDLTVEDAREFFDAIPAVARK------------- 809

Query: 465 RLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRDN 523
            LQ L++VGL+Y+ L ++A TLSGGEAQR++L+ ++     G  +Y+LDEP+ GLH  D 
Sbjct: 810 -LQTLIDVGLSYITLGQAATTLSGGEAQRVKLSRELSKRDTGQTLYILDEPTTGLHFHDV 868

Query: 524 ERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANP 583
            +LL+ L  LR+ GNTV+V+EH+ D I+ AD ++D+GP  G  GG ++A G  E++    
Sbjct: 869 NQLLKVLHRLRDHGNTVVVIEHNLDVIKTADWIVDLGPEGGSKGGQIIATGTPEDVAKIK 928

Query: 584 NSLTGQYLSGVKK 596
            S TG+YL  + K
Sbjct: 929 KSYTGKYLKPMLK 941