Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., excinuclease ABC subunit UvrA from Erwinia tracheiphila SCR3

 Score = 1538 bits (3981), Expect = 0.0
 Identities = 756/940 (80%), Positives = 846/940 (90%), Gaps = 1/940 (0%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIEVRGARTHNLKNINL IPRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITE++DYLRLL+ARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120

Query: 121 PEHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARID 180
           PEH V L AQT+SQMVD VL L EG ++MLLA I+KERKGEH KTLENLA+QG+IRARID
Sbjct: 121 PEHDVTLAAQTVSQMVDNVLALTEGRRLMLLAPIIKERKGEHSKTLENLASQGYIRARID 180

Query: 181 GETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEG- 239
           GE CDL+DPPKLEL KKHTIEV+VDRFKVR DLQQRLAESFETALELSGG VVVA M+  
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGTVVVADMDDT 240

Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
             EE +FSANFACP CGYSM ELEPRLFSFNNPAGAC TCDGLGVQQYFDP+RV+Q+ +L
Sbjct: 241 SAEELVFSANFACPVCGYSMSELEPRLFSFNNPAGACATCDGLGVQQYFDPERVVQNPDL 300

Query: 300 SLAQGAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKY 359
           SLA GAIRGWD++NFYYFQML +L+EH +FD+ TPF  L    +++IL+GSG+  IEFKY
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLCSLSEHLNFDIETPFISLDASTRKVILYGSGKENIEFKY 360

Query: 360 INDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARN 419
           INDRGD  +++HPFEG+LHN+ERRY++TES +VRE+LAK+ISN+ C+SC+GTRL+ EAR+
Sbjct: 361 INDRGDTSVRRHPFEGVLHNMERRYKETESAAVREDLAKFISNRACASCEGTRLRREARH 420

Query: 420 VFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           VF+ +T LPTI ++SI  A+TFFQE+KL GQRA+IAEKV+KEI DRL+FLVNVGLNYL+L
Sbjct: 421 VFVENTNLPTISDMSIGHAMTFFQEMKLSGQRAKIAEKVLKEIGDRLKFLVNVGLNYLSL 480

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL+TL HLRNLGNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLETLVHLRNLGNT 540

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHDEDAIR ADHVIDIGPGAGV GG VVAEG V++I+A   SLTGQ+LSG + IAV
Sbjct: 541 VIVVEHDEDAIRAADHVIDIGPGAGVRGGQVVAEGTVDDIMAVDASLTGQFLSGKRSIAV 600

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P++R      K ++L GA GNNLK+V L++PVGLF+C+TGVSGSGKSTLINDT F IA  
Sbjct: 601 PQERVKAAPNKVLKLTGAKGNNLKDVTLTLPVGLFSCITGVSGSGKSTLINDTLFPIAQR 660

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
            LNGAT   PAPYR I G+EHFDKVIDIDQSPIGRTPRSNPATYTGIFTP+RELF+G  E
Sbjct: 661 LLNGATIIEPAPYRDISGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFSGVPE 720

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           SR+RGY PGRFSFNVRGGRCEACQGDGVIKVEMHFLPD+YVPCD CKGKRYNRETLE++Y
Sbjct: 721 SRTRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGK+I EVL+MT+E+AREFFD VP +ARKLQT+MDVGLSYIRLGQSATTLSGGEAQRVKL
Sbjct: 781 KGKSIHEVLEMTIEEAREFFDAVPALARKLQTMMDVGLSYIRLGQSATTLSGGEAQRVKL 840

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           ARELSKR TG+TLYILDEPTTGLHF DIQQLL VLH+LRD GNT+VVIEHNLDVIKTADW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADW 900

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           I+DLGPEGG GGG I+A GTPE VA+ +ASHTARFLKPLL
Sbjct: 901 IVDLGPEGGSGGGEILASGTPETVAKCKASHTARFLKPLL 940



 Score =  129 bits (324), Expect = 9e-34
 Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 15/194 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC  C G R   E   +     ++  ++E++I +A  FF                +  + 
Sbjct: 762 PCDQCKGKRYNRETLEIKYKGKSIHEVLEMTIEEAREFFD--------------AVPALA 807

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            +LQ +++VGL+Y+ L +SA TLSGGEAQR++LA ++     G  +Y+LDEP+ GLH  D
Sbjct: 808 RKLQTMMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
            ++LL+ L  LR+ GNT++V+EH+ D I+ AD ++D+GP  G  GG ++A G  E +   
Sbjct: 868 IQQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILASGTPETVAKC 927

Query: 583 PNSLTGQYLSGVKK 596
             S T ++L  + K
Sbjct: 928 KASHTARFLKPLLK 941