Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., ATP-binding cassette domain-containing protein from Dickeya dianthicola ME23

 Score =  219 bits (557), Expect = 6e-61
 Identities = 182/653 (27%), Positives = 296/653 (45%), Gaps = 84/653 (12%)

Query: 270 NNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNF--YYFQMLTALAEHY 327
           N    ACP C GLG     D D +I ++   L +     W       YY Q+L A  +  
Sbjct: 123 NKYENACPYCRGLGETNEVDEDELINES-CRLDEKPFSCWKNGELADYYNQLLLAYCQKK 181

Query: 328 DFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDT 387
           + D    F+ L+++ +  + +G+   +I F+    +G I+ ++  ++G++      Y + 
Sbjct: 182 NIDTSKTFSSLTQEEKNALCYGNSEEKITFR-CKHKGKIKQRRAFYKGVI-----LYANE 235

Query: 388 ESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKL 447
              S      KY     CS C G+R+  +   + +        + L ++      +E+  
Sbjct: 236 SKQS------KYQKETTCSFCKGSRVNQKTAQLDVIGLTFENFLSLPVSKLCEVIKEVCE 289

Query: 448 EGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGV 507
           +     I  +V+  IN       N+GL YLNLSRS  +LSGGE Q++  +  + + + G+
Sbjct: 290 DS----ILLRVLSSIN-------NIGLGYLNLSRSIPSLSGGELQKLMFSRLLTSNISGI 338

Query: 508 MYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHG 567
           + V+DE S  ++  D   +L  +  L    NT+++ EH++  I  AD    IG  AG  G
Sbjct: 339 LIVIDEISSQVNPIDYPDILSKIKKLSEK-NTLVLTEHNQCFIDNADVSFHIGKQAGSAG 397

Query: 568 GMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDL 627
           G +      E I A PN      +S             +D  K         NN+ N  +
Sbjct: 398 GEICQP---EVIQALPNKNNRNKISDFFHF--------EDLNK---------NNIINQSV 437

Query: 628 SIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQGLEHFDKVIDI 687
            IP    T  +G+SGSGKS+L                           + +    + I +
Sbjct: 438 KIPKECVTIFSGISGSGKSSLA--------------------------KSICEVTESIYV 471

Query: 688 DQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGV 747
            Q     T RS+ A+ T +   I E F     S+  G     F  + +GG C+ C G G+
Sbjct: 472 SQKSPSYTGRSSVASITELNKIIAEYF-----SQKTGLSAEYFLPHKKGG-CKDCNGTGI 525

Query: 748 IKVEMHFLPDVYVPCDVCKGKRYNRETLEVR--YKGKTIDEVLDMTVEDAREFFDPVPVI 805
           IK+E  F  D+Y+PC+ C G  +  +  EV     G  I EV D  ++D   FF     I
Sbjct: 526 IKLERGFEKDIYIPCNTCNGSLFAPDVSEVTTLVNGMNIVEVYDTELKDISTFFQDNK-I 584

Query: 806 ARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSK-RDTGKTLYILDEPTTGLHF 864
            + L T+  +GLS+++L +   +LSGGE +R+KL   LSK R T K L+I DEPT GL  
Sbjct: 585 NQILSTIAALGLSHLKLNRKTQSLSGGEMRRIKLCEILSKTRKTSKLLFI-DEPTAGLDP 643

Query: 865 HDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAE 917
               ++L+ +++     N +V+IEH  +    AD+ + +GP  G+ GG ++ +
Sbjct: 644 ETASKVLNFIYQKAGLFNAIVIIEHRPEAEDYADFKVSIGPGAGEQGGRVVTQ 696



 Score = 85.9 bits (211), Expect = 8e-21
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 18/179 (10%)

Query: 404 PCSSCDGTRLKIEARNV--FINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKE 461
           PC++C+G+    +   V   +N   +  + +  + D  TFFQ+ K               
Sbjct: 539 PCNTCNGSLFAPDVSEVTTLVNGMNIVEVYDTELKDISTFFQDNK--------------- 583

Query: 462 INDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIG-AGLVGVMYVLDEPSIGLHQ 520
           IN  L  +  +GL++L L+R  ++LSGGE +RI+L   +        +  +DEP+ GL  
Sbjct: 584 INQILSTIAALGLSHLKLNRKTQSLSGGEMRRIKLCEILSKTRKTSKLLFIDEPTAGLDP 643

Query: 521 RDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEI 579
               ++L  +     L N ++++EH  +A   AD  + IGPGAG  GG VV +  +  I
Sbjct: 644 ETASKVLNFIYQKAGLFNAIVIIEHRPEAEDYADFKVSIGPGAGEQGGRVVTQEAIHPI 702



 Score = 78.2 bits (191), Expect = 2e-18
 Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 5/127 (3%)

Query: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           M  I  +G  THNLKNIN+ IP +K+ VI G SG+GKSSLAF ++Y   +  +    S Y
Sbjct: 1   MKNIIFKGMETHNLKNININIPLNKVTVIYGRSGAGKSSLAFSSIYQLCKDEFDAVESGY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC 120
             +         +   +GL PA++I Q++T+ NPRST+ +   +   L  L A+      
Sbjct: 61  LNE-----SNYKIADYDGLIPAVAIPQRNTNTNPRSTIYSYLNIPQALYSLKAKYNSSIP 115

Query: 121 PEHQVPL 127
             HQ+ L
Sbjct: 116 DYHQLKL 122



 Score = 43.1 bits (100), Expect = 6e-08
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 610 KTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTA-- 667
           K +  KG   +NLKN++++IP+   T + G SG+GKS+L   + +++     +   +   
Sbjct: 2   KNIIFKGMETHNLKNININIPLNKVTVIYGRSGAGKSSLAFSSIYQLCKDEFDAVESGYL 61

Query: 668 TPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQP 727
             + Y+ I   +     + I Q      PRS   +Y  I   +  L A    S    +Q 
Sbjct: 62  NESNYK-IADYDGLIPAVAIPQRNTNTNPRSTIYSYLNIPQALYSLKAKYNSSIPDYHQ- 119

Query: 728 GRFSFNVRGGRCEACQGDG 746
                N     C  C+G G
Sbjct: 120 --LKLNKYENACPYCRGLG 136



 Score = 36.6 bits (83), Expect = 6e-06
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 32/93 (34%)

Query: 12  HNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKP 71
           +N+ N ++ IP++ + + +G+SGSGKSSLA                        S+ E  
Sbjct: 430 NNIINQSVKIPKECVTIFSGISGSGKSSLA-----------------------KSICE-- 464

Query: 72  DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEV 104
                  ++ +I + QKS S+  RS+V +ITE+
Sbjct: 465 -------VTESIYVSQKSPSYTGRSSVASITEL 490