Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1495 a.a., Excinuclease ATPase subunit from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 313 bits (801), Expect = 7e-89
Identities = 196/634 (30%), Positives = 313/634 (49%), Gaps = 54/634 (8%)
Query: 266 LFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTA--- 322
LFSFN+P GAC C G+G +Y D +++ D N +L +GAI + + +T
Sbjct: 122 LFSFNHPKGACEHCRGIGEAEYIDIHKLVGDENKTLREGAITTTLPNGYIVYSQVTVEEL 181
Query: 323 --LAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYINDRGDIRLK----KHPFEGI 376
+ + F V P+ LSK+ Q++IL+GS R ++ + + +R + K EG
Sbjct: 182 NKVCAAHGFSVDVPWKDLSKEQQDVILYGSDRIKVFYGKHSLESRLRWEGFKAKPREEGY 241
Query: 377 LHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIA 436
+ D + +++S K C SC G R+K E ++LS+
Sbjct: 242 YKGIIPIMSDILRLDRNVSILRFVSAKICPSCHGARIKAEHLRYRWKGLNFQEWMDLSLQ 301
Query: 437 DALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRL 496
Q L G + +K+ ++ D L+ +G+ + LS S+ +S G+ QRI+L
Sbjct: 302 QLYDRLQAQSLSGGEKVLVDKLCTQLLD----LIRLGMEHYQLSTSSMDISSGDGQRIKL 357
Query: 497 ASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHV 556
Q+ + L G++YV DEPSIGL + L L GNTV+VVEHD + I+ AD V
Sbjct: 358 IKQVNSSLQGILYVFDEPSIGLPAAYQQHLRHIFDRLILRGNTVMVVEHDLNFIQSADWV 417
Query: 557 IDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKG 616
+++GP AG+ GG V+ G+++ LT A+ Q P +
Sbjct: 418 VELGPKAGIEGGEVIFNGSIDSF------LTADPAKSPTLTAIQNQNEPSRKPAASQQVN 471
Query: 617 AVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQ 676
A + + + + G T + Q
Sbjct: 472 AFQPQPQTLSVV------------------------------SRKTGKLLETITAFCDQQ 501
Query: 677 GLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRG 736
GL + + PIG+TPRSNP+TYTG+ IR+L A T ++S FSFN +
Sbjct: 502 GLTF----LTVTDQPIGKTPRSNPSTYTGLADGIRDLLAKTSTAKSLKLAKSAFSFNNKS 557
Query: 737 GRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAR 796
GRC C+G GVI + M + ++ C VC+GKR+ + L+V ++GK I E+ D+++ +A
Sbjct: 558 GRCPNCEGAGVITLSMSVMGNINQVCPVCQGKRFKPDVLKVSWQGKNIAEIYDLSIREAA 617
Query: 797 EFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD 856
EFF +A L ++ +GL YI+LGQ + TLSGGEAQR+KL + +K + KT+ +L+
Sbjct: 618 EFFAEEKKLANILALMLQLGLGYIKLGQPSNTLSGGEAQRIKLTKHFAK-PSKKTVLLLE 676
Query: 857 EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHN 890
EP+ GLH ++QQL+ L++L+ +V E++
Sbjct: 677 EPSIGLHQQNVQQLMDALNQLKKQTAGIVCFENH 710
Score = 257 bits (656), Expect = 5e-72
Identities = 191/639 (29%), Positives = 307/639 (48%), Gaps = 39/639 (6%)
Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQG------AIRGWDQKNFYYFQML 320
FS N+ G C CDG+G + D D+++ D LS+ G + + Q + Y +L
Sbjct: 867 FSNNHELGKCGICDGVGQELLPDLDKMVLDGGLSINDGLFEHHKGLAYYGQASGQYMAVL 926
Query: 321 TALAEHYDFDVHTPFNKLSKKIQEIILHG-SGRT-EIEFKY-INDRGDIRLKKHPFEGIL 377
+ + Y FD++TPFN+L+ +++I G G+T E +K+ R + + G+
Sbjct: 927 GEVGKAYGFDLNTPFNELTPVQKDVIFKGVEGKTWEATWKFRTKTREGTQQVNMKWSGLF 986
Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIAD 437
L Y T N + L +S CS C G+ L+ E V I ++ + +
Sbjct: 987 KYLMDEYFLTRKNKY-QPLKSLLSYNECSHCQGSGLQPERLAVQIGGNSIHALKSMDFKK 1045
Query: 438 ALTFFQEL-KLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRL 496
+ + + E Q+ V + + L+ + +++L L+R + TLSGGE QR+ L
Sbjct: 1046 LDHWLKNVGATESIDQQLIGNVKANLANTLKRAKQLHIDHLQLNRKSATLSGGEQQRVTL 1105
Query: 497 ASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHV 556
Q+ + L G+ Y+LDEPS GL + L+Q L L GNTV+V+EH+++ + A+ +
Sbjct: 1106 IKQLNSPLKGITYLLDEPSAGLSADNIPDLVQLLRELVEKGNTVIVIEHNKEIMLAAEKL 1165
Query: 557 IDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKG 616
++IGP AG GG + G+ + P+S +K+ A P T +T+ LK
Sbjct: 1166 VEIGPQAGQEGGYITFHGSPAAFLERPDS-----HPFLKRPAQP--LTLATGNQTILLKD 1218
Query: 617 AVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT--ALNGATTATPAPYRS 674
+ L L + VG T +TG SG GK+TL+ D +N A P Y
Sbjct: 1219 LARHTLVKKSLEVSVGGITAITGKSGIGKTTLVKDVLIPSIEQEHPVNCAAITWPKAY-- 1276
Query: 675 IQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNV 734
G ++F + + R+ Y + I ++F S+ G + FS+
Sbjct: 1277 -SGAQYF------EPKKLQAHNRTLLVDYLDLLKDICKVF-----SKETGRKARDFSYKN 1324
Query: 735 RGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVED 794
+ +C C+G GV+ + + C+VC G+RY LE R G I EVL ++V +
Sbjct: 1325 KASQCPNCKGAGVVSTSLDVAANHIETCEVCHGQRYQANLLEYRVGGLHIAEVLALSVRE 1384
Query: 795 AREFFDPVPVIARK---LQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKT 851
R + V + +Q L +GL+++RL Q+ +LS GE QR+ L L K T
Sbjct: 1385 LRSWLADHQVATSRETFIQQLDAIGLAHLRLDQAVKSLSSGEKQRLLLLHWL-KSKTRDQ 1443
Query: 852 LYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHN 890
L ILDEP+TGLH+ DI L +L L N ++VI+HN
Sbjct: 1444 LLILDEPSTGLHYADIDLLFEILSSL-SRDNDILVIDHN 1481
Score = 102 bits (253), Expect = 2e-25
Identities = 95/366 (25%), Positives = 148/366 (40%), Gaps = 64/366 (17%)
Query: 402 NKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKE 461
N+ C C G R K + V + I +LSI +A FF E K+
Sbjct: 580 NQVCPVCQGKRFKPDVLKVSWQGKNIAEIYDLSIREAAEFFAE--------------EKK 625
Query: 462 INDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQR 521
+ + L ++ +GL Y+ L + + TLSGGEAQRI+L + +L+EPSIGLHQ+
Sbjct: 626 LANILALMLQLGLGYIKLGQPSNTLSGGEAQRIKLTKHFAKPSKKTVLLLEEPSIGLHQQ 685
Query: 522 DNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIA 581
+ ++L+ L L+ ++ E+ + D +D
Sbjct: 686 NVQQLMDALNQLKKQTAGIVCFENHQLFQSQCDVWVD----------------------- 722
Query: 582 NPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVS 641
N+L Q A+P P + + + GA + LK++ L P + VTG+S
Sbjct: 723 --NALAAQ------PTAIP--LPPAQRRDIIAIHGARTHALKDISLEFPKEHLSVVTGIS 772
Query: 642 GSGKSTLINDTFFKIAHTALNGATTATPAPYRSIQG---------LEHFDKVIDIDQSPI 692
GSGKS+L+ DT L T + +S G +E I I +
Sbjct: 773 GSGKSSLVIDTLHGF---GLQEMTKQFSSYQQSRVGVNFQLEVDYIEGLTPSICITRKEK 829
Query: 693 GRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEM 752
+ RS+ A T +R F+ + + FS N G+C C G G
Sbjct: 830 SFSERSDVAQQTDFDKTLRFAFSRKAQYTGLDWSASHFSNNHELGKCGICDGVG-----Q 884
Query: 753 HFLPDV 758
LPD+
Sbjct: 885 ELLPDL 890
Score = 100 bits (250), Expect = 5e-25
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 11/168 (6%)
Query: 762 CDVCKGKRYNRETLEVRYKGKTIDEVLDMTVED------AREFFDPVPVIARKLQT---- 811
C C G R E L R+KG E +D++++ A+ V+ KL T
Sbjct: 270 CPSCHGARIKAEHLRYRWKGLNFQEWMDLSLQQLYDRLQAQSLSGGEKVLVDKLCTQLLD 329
Query: 812 LMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHDIQQLL 871
L+ +G+ + +L S+ +S G+ QR+KL ++++ G LY+ DEP+ GL Q L
Sbjct: 330 LIRLGMEHYQLSTSSMDISSGDGQRIKLIKQVNSSLQG-ILYVFDEPSIGLPAAYQQHLR 388
Query: 872 SVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGT 919
+ RL GNTV+V+EH+L+ I++ADW+++LGP+ G GG +I G+
Sbjct: 389 HIFDRLILRGNTVMVVEHDLNFIQSADWVVELGPKAGIEGGEVIFNGS 436
Score = 99.8 bits (247), Expect = 1e-24
Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 18/193 (9%)
Query: 759 YVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVED---------AREFFDPVPV----- 804
Y C C+G E L V+ G +I + M + A E D +
Sbjct: 1010 YNECSHCQGSGLQPERLAVQIGGNSIHALKSMDFKKLDHWLKNVGATESIDQQLIGNVKA 1069
Query: 805 -IARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLH 863
+A L+ + + +++L + + TLSGGE QRV L ++L+ G T Y+LDEP+ GL
Sbjct: 1070 NLANTLKRAKQLHIDHLQLNRKSATLSGGEQQRVTLIKQLNSPLKGIT-YLLDEPSAGLS 1128
Query: 864 FHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDV 923
+I L+ +L L + GNTV+VIEHN +++ A+ ++++GP+ GQ GG I G+P
Sbjct: 1129 ADNIPDLVQLLRELVEKGNTVIVIEHNKEIMLAAEKLVEIGPQAGQEGGYITFHGSP--A 1186
Query: 924 AQIEASHTARFLK 936
A +E + FLK
Sbjct: 1187 AFLERPDSHPFLK 1199
Score = 96.3 bits (238), Expect = 1e-23
Identities = 47/111 (42%), Positives = 71/111 (63%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
+ + A +NLKN++L +P ++LIV+TGLSGSGKSSLA + EG R ++ESL AY +Q
Sbjct: 1 MRITDAHQNNLKNVSLDLPENRLIVVTGLSGSGKSSLAMGVIANEGYRYFLESLPAYNQQ 60
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYAR 114
+ +V+HI L P I +EQ + +T GT++E+ R+L+AR
Sbjct: 61 HAQAIPTAEVEHISALPPVIKVEQSKRFQSINATFGTLSELTPLFRVLFAR 111
Score = 91.7 bits (226), Expect = 3e-22
Identities = 48/113 (42%), Positives = 72/113 (63%)
Query: 2 DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
D I + GARTH LK+I+L P++ L V+TG+SGSGKSSL DTL+ G + + S+Y
Sbjct: 741 DIIAIHGARTHALKDISLEFPKEHLSVVTGISGSGKSSLVIDTLHGFGLQEMTKQFSSYQ 800
Query: 62 RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYAR 114
+ + + + +VD+IEGL+P+I I +K S + RS V T+ LR ++R
Sbjct: 801 QSRVGVNFQLEVDYIEGLTPSICITRKEKSFSERSDVAQQTDFDKTLRFAFSR 853
Score = 53.1 bits (126), Expect = 1e-10
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 620 NNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDT-------FFKIAHTALNGATTATPAPY 672
NNLKNV L +P VTG+SGSGKS+L +F + A N A P
Sbjct: 9 NNLKNVSLDLPENRLIVVTGLSGSGKSSLAMGVIANEGYRYFLESLPAYN-QQHAQAIPT 67
Query: 673 RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA--GTQESRSRGYQPGRF 730
++ + VI ++QS ++ + T + + R LFA +E+ S+ F
Sbjct: 68 AEVEHISALPPVIKVEQSKRFQSINATFGTLSELTPLFRVLFARYAGEETMSKSL----F 123
Query: 731 SFNVRGGRCEACQGDGVIK-VEMHFL 755
SFN G CE C+G G + +++H L
Sbjct: 124 SFNHPKGACEHCRGIGEAEYIDIHKL 149
Score = 33.9 bits (76), Expect = 8e-05
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 261 ELEPRLFSFNNPAGACPTCDGLGV 284
+L FSFNN +G CP C+G GV
Sbjct: 545 KLAKSAFSFNNKSGRCPNCEGAGV 568
Score = 28.1 bits (61), Expect = 0.004
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 265 RLFSFNNPAGACPTCDGLGV 284
R FS+ N A CP C G GV
Sbjct: 1318 RDFSYKNKASQCPNCKGAGV 1337