Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 946 a.a., excinuclease ABC, A subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  957 bits (2473), Expect = 0.0
 Identities = 499/938 (53%), Positives = 676/938 (72%), Gaps = 12/938 (1%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           + IE+ GAR HNLKN++L+IPR+KL+VITGLSGSGKSSLAFDT+YAEGQRRY+ES SAYA
Sbjct: 10  ETIEIYGAREHNLKNLDLSIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRRYMESFSAYA 69

Query: 62  RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCP 121
           R FL  ME+PDVD I GLSP ISIEQK+TS NPRSTVGT+TE+YD++RLLYAR GE    
Sbjct: 70  RSFLGGMERPDVDKINGLSPVISIEQKTTSKNPRSTVGTVTEIYDFMRLLYARSGEAYSY 129

Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDG 181
                +  QT  Q++D++LE   G K+ +LA +VK RKG + +  E +   GF + R+DG
Sbjct: 130 LSGKKMIRQTEDQIIDQLLEHFAGKKLYILAPVVKGRKGHYRELFEQIRKMGFSKVRVDG 189

Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDG 241
              ++    +++ +K H IE++VDR     D + R+ +S +TAL+   GI+++   EG+ 
Sbjct: 190 VVMEMVPKMQVDRYKIHDIEIVVDRIIAEEDDRYRITQSLKTALQHGKGIIMLRDEEGNV 249

Query: 242 EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSL 301
               FS     P  G S  E  P  FSFN+P GACPTC+G+GV +    + +I D NLS+
Sbjct: 250 HH--FSKYLMDPTTGLSYDEPAPNTFSFNSPYGACPTCNGIGVIEEITKENIIPDPNLSI 307

Query: 302 AQGAIRG-WDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYI 360
           ++G I    + ++ + F+ + A+ + +   + TP   L +++ +++L+G  +T +E   +
Sbjct: 308 SRGGIVPIGEYRDIWIFKKIEAILKRHKASLSTPIKDLKEEVLDVLLYGD-KTAVEVDSV 366

Query: 361 NDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNV 420
              G        FEGI++ L+++ ++  S  +++ ++ + + + C  C+G RLK EA + 
Sbjct: 367 KYPGT--KWSTTFEGIVNFLQKQ-QEGGSEKIQKWVSDFTTTRECPDCEGYRLKKEALHF 423

Query: 421 FINDTALPTIVELSIADALTFFQEL--KLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLN 478
            I    +  +  + I     +F ++  KL  ++  I E+V+KEI  R+ FL+++GL+YL+
Sbjct: 424 LIAGKHIGELAMMDIRQLGNWFDQIDDKLTEKQKIIGEEVLKEIRKRIGFLLDIGLDYLS 483

Query: 479 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGN 538
           L+R   TLSGGEAQRIRLA+QIG  LVGV+Y+LDEPSIGLHQRDN +L++ L  LR+LGN
Sbjct: 484 LNRPLRTLSGGEAQRIRLATQIGTQLVGVLYILDEPSIGLHQRDNVKLIKALQDLRDLGN 543

Query: 539 TVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIA 598
           +VLVVEHD+D +  AD+V+DIGPGAG HGG +VA+G+ +EI+   NSLT +YL+G ++IA
Sbjct: 544 SVLVVEHDKDMMLDADYVVDIGPGAGRHGGHIVAKGSPKEILQQ-NSLTAKYLNGKEEIA 602

Query: 599 VPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH 658
           +P++R  K +   + L  A G+NLKNVDL +P+G   CVTGVSGSGKS+LI++T F + +
Sbjct: 603 IPQERR-KGSGNFLTLLQASGHNLKNVDLELPLGSMICVTGVSGSGKSSLIHETLFPLLN 661

Query: 659 TALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQ 718
                 +  TP PY SI+GLEH DKVI++DQSPIGRTPRSNPATYTG+FT IR LF    
Sbjct: 662 QHFY-RSRKTPLPYGSIKGLEHLDKVIEVDQSPIGRTPRSNPATYTGVFTDIRALFTELP 720

Query: 719 ESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVR 778
           E++ RGY+PGRFSFNV+GGRCE C+G G+  +EM FLPDV++PC+ CKGKRYNRETLEVR
Sbjct: 721 EAKIRGYKPGRFSFNVKGGRCEDCEGAGMKLIEMDFLPDVHIPCETCKGKRYNRETLEVR 780

Query: 779 YKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVK 838
           +KGK+I +VLDMTVE A EFF+  P I RK+QTL DVGL YI LGQ ATTLSGGEAQRVK
Sbjct: 781 FKGKSISDVLDMTVEQAVEFFENQPKILRKIQTLNDVGLGYITLGQHATTLSGGEAQRVK 840

Query: 839 LARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTAD 898
           LA ELSK+DTGKT YILDEPTTGLHF DI+ LL VL+RL + GNTV++IEHNLDVIK AD
Sbjct: 841 LATELSKKDTGKTFYILDEPTTGLHFKDIEHLLEVLNRLVEKGNTVLIIEHNLDVIKVAD 900

Query: 899 WIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
            IIDLGPEGG  GG I+A+GTPE+V++  +S+TA+FL+
Sbjct: 901 HIIDLGPEGGNKGGQILAQGTPEEVSKHPSSYTAKFLR 938



 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 77/284 (27%), Positives = 128/284 (45%), Gaps = 39/284 (13%)

Query: 603 RTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN 662
           +T    ++T+E+ GA  +NLKN+DLSIP      +TG+SGSGKS+L  DT +        
Sbjct: 3   KTVAAVEETIEIYGAREHNLKNLDLSIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRRYM 62

Query: 663 GATTATPAPYRSIQGLEHFD--------KVIDIDQSPIGRTPRSNPATYTGIFTPIRELF 714
            + +A    +  + G+E  D         VI I+Q    + PRS   T T I+  +R L+
Sbjct: 63  ESFSAYARSF--LGGMERPDVDKINGLSPVISIEQKTTSKNPRSTVGTVTEIYDFMRLLY 120

Query: 715 AGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFL-PDVYVPCDVCKGKR-YNR 772
           A + E+ S  Y  G+             +   + ++  HF    +Y+   V KG++ + R
Sbjct: 121 ARSGEAYS--YLSGK-------KMIRQTEDQIIDQLLEHFAGKKLYILAPVVKGRKGHYR 171

Query: 773 ETLE---------VRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLG 823
           E  E         VR  G  ++ V  M V+  R     + ++  ++    D      R+ 
Sbjct: 172 ELFEQIRKMGFSKVRVDGVVMEMVPKMQVD--RYKIHDIEIVVDRIIAEED---DRYRIT 226

Query: 824 QS-ATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHD 866
           QS  T L  G+   + + R+        + Y++D PTTGL + +
Sbjct: 227 QSLKTALQHGKG--IIMLRDEEGNVHHFSKYLMD-PTTGLSYDE 267