Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 938 a.a., uvrA paralog in Bacteroidetes (from data) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  766 bits (1977), Expect = 0.0
 Identities = 419/947 (44%), Positives = 599/947 (63%), Gaps = 47/947 (4%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I ++ AR +NLKN+++ IPR+KL+V+TGLSGSGKSSLAFDTL+AEGQR YVESLS+YARQ
Sbjct: 21  IIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLSSYARQ 80

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL  MEKPDV++I+G+SPAI+I+QK ++ NPRSTVGT TE+YDYL+LL++R+G    P  
Sbjct: 81  FLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFSRIGRTISPVS 140

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
              +K  T++ +VD +    EG K+M+   +         K LE L  +GF R  I+GE 
Sbjct: 141 GEEVKHHTVTDVVDFIHGFEEGEKVMISCPLQANASRTMQKELEVLLQKGFTRIIIEGEV 200

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQ---RLAESFETAL-ELSGGIVVVAPMEG 239
             + D  + +      IE+++DR  VR D +    R+A+S +TA  E  G   VV P + 
Sbjct: 201 YYVEDLLEEKTIPDGDIEILIDRAVVRKDDEDNHFRIADSVQTAFFEGHGDCFVVIPGK- 259

Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANL 299
             E + FS  F      + +  +    FSFNNP GAC TC+G G     DPD VI D +L
Sbjct: 260 --ETRKFSDRFELDGLSFELPSVN--FFSFNNPYGACKTCEGFGSVLGIDPDLVIPDKSL 315

Query: 300 SLAQGAIRGW-DQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFK 358
           S+ +GAI  W  +    +   L     H+DF +H P+ +L +  +++I  G+        
Sbjct: 316 SIYEGAIAPWRGETTKKWAAPLIKNGIHFDFPIHRPYEELDEAHKDLIWKGNSY------ 369

Query: 359 YINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEAR 418
                         F+G+    E     T     R  L+++     C  C GTRL+ +A 
Sbjct: 370 --------------FKGLDAFFEHLQSKTHKIQYRVMLSRFRGRTTCPDCKGTRLRKDAA 415

Query: 419 NVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLN 478
            V +N  ++  IV + I  AL FFQ ++L     + A +++KEI +RL+++  VGL YL 
Sbjct: 416 YVKVNGHSITDIVLMPIDRALAFFQNIQLTEAEEKTANRLLKEILNRLEYIDKVGLGYLT 475

Query: 479 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGN 538
           L+R   +LSGGE QRI+LA+ +G+ LVG MY+LDEPSIGLH RD++RL+  L  LR++GN
Sbjct: 476 LNRLTSSLSGGEYQRIKLATSLGSALVGSMYILDEPSIGLHPRDSDRLISVLKSLRDMGN 535

Query: 539 TVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIA 598
           TV+VVEH+E  ++ AD ++DIGP AGV+GG +V +G ++E++A+  + T +YL G +KI 
Sbjct: 536 TVIVVEHEEKIMKAADEIVDIGPEAGVNGGKLVFQGKLDELLAHGETYTAKYLKGEEKID 595

Query: 599 VPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF---- 654
           + +    +  K  + + GA  NNLKN+++ IP+   T +TGVSGSGKSTLI    +    
Sbjct: 596 IKQGN--RKWKDKILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLYPALG 653

Query: 655 KIAHTALN--GATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRE 712
           KI  T ++  G        Y+SI  +E       +DQ+PIG++ RSNP TY   +  IR 
Sbjct: 654 KILGTVIDETGKFDKLEGDYKSISQVEF------VDQNPIGKSSRSNPVTYVKAYDAIRS 707

Query: 713 LFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNR 772
           LFA    ++ RGY+P  FSFNV GGRCEACQG+G  K+EM F+ D+++ C+ CKGKR+  
Sbjct: 708 LFADQPVAKQRGYKPAFFSFNVDGGRCEACQGEGTQKIEMQFMADIFLTCESCKGKRFKN 767

Query: 773 ETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGG 832
           E L++ YK K I +VL+MT+++A EFF     I  +LQ L +VGL YI LGQS+ TLSGG
Sbjct: 768 EILDITYKDKNIADVLEMTIDEAMEFFQGKNAIISRLQPLQEVGLGYIGLGQSSNTLSGG 827

Query: 833 EAQRVKLARELSK---RDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEH 889
           EAQRVKLA  L K   +     L+I DEPTTGLHFHDI++LL  ++ L + G++V++IEH
Sbjct: 828 EAQRVKLASFLGKGGNKAKDHVLFIFDEPTTGLHFHDIKKLLYSINALIEEGHSVIIIEH 887

Query: 890 NLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
           N +VIK+ADW+IDLGPEGG+ GG +  EGTPE + +++ ++TA++L+
Sbjct: 888 NTEVIKSADWVIDLGPEGGERGGNVTFEGTPEALREVKDNYTAKYLR 934



 Score = 61.6 bits (148), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 14/116 (12%)

Query: 2   DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
           DKI + GAR +NLKNIN+ IP + L VITG+SGSGKS+L    LY         +L    
Sbjct: 605 DKILINGARENNLKNINVQIPLNTLTVITGVSGSGKSTLIKKVLY--------PALGKIL 656

Query: 62  RQFLSLMEKPDVDHIEGLSPAIS----IEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
              +   E    D +EG   +IS    ++Q     + RS   T  + YD +R L+A
Sbjct: 657 GTVID--ETGKFDKLEGDYKSISQVEFVDQNPIGKSSRSNPVTYVKAYDAIRSLFA 710



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 607 DAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATT 666
           D K  + +K A  NNLKN+ ++IP      VTG+SGSGKS+L  DT F         + +
Sbjct: 16  DPKSYIIIKNARVNNLKNLSVAIPRNKLVVVTGLSGSGKSSLAFDTLFAEGQRMYVESLS 75

Query: 667 ATPAPY------RSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
           +    +        ++ ++     I I Q    + PRS   T T I+  ++ LF+
Sbjct: 76  SYARQFLGRMEKPDVEYIKGVSPAIAIQQKVSTKNPRSTVGTTTEIYDYLKLLFS 130