Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 943 a.a., UvrABC system protein A from Acinetobacter radioresistens SK82

 Score = 1324 bits (3427), Expect = 0.0
 Identities = 646/937 (68%), Positives = 775/937 (82%), Gaps = 1/937 (0%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGARTHNLKN++L IPRDK +VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ
Sbjct: 6   IRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 65

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FLS MEKP+VD IEGLSPAI+IEQKSTSHNPRSTVGTITE+YDYLRLLYARVG P CPEH
Sbjct: 66  FLSQMEKPEVDAIEGLSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPYCPEH 125

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
            +P+ AQT+S+MVD V  LPEG+ +MLLA +V+ERKGE+    E L +QGF+RAR+DGE 
Sbjct: 126 DLPMVAQTVSEMVDAVKALPEGTALMLLAPVVRERKGEYSTLFEQLQSQGFVRARVDGEI 185

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDGEE 243
            ++  PP+L+  KKHTIEVIVDRFKVR DL  R+AESFETAL L G + V++ M+ +  +
Sbjct: 186 IEIDTPPELDKKKKHTIEVIVDRFKVRDDLGNRIAESFETALRLGGDLAVLSWMKDEHPD 245

Query: 244 QIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQ 303
           ++FSA  +CP C  ++ +LEPRLFSFNNP GACP CDGLG + +F  D++I +  LS++Q
Sbjct: 246 RVFSAKHSCPDCDRAVGDLEPRLFSFNNPFGACPACDGLGTRSHFSADKLIHNPELSISQ 305

Query: 304 GAIRGWDQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYINDR 363
           GAIRGWD++  YY+ ML  +A HYD+ + TP+  L K IQ+  L+G+GR +I+  Y+++R
Sbjct: 306 GAIRGWDRQRPYYYSMLQKVAAHYDYSLETPWKDLGKDIQKKFLYGTGREKIDLSYVDER 365

Query: 364 GDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFIN 423
           G    +  PFEG+L +LERRYR+TESN VR++L++Y+SN  C  CDG+RL   +RNV I 
Sbjct: 366 GRRHNRVMPFEGVLPHLERRYRETESNYVRDDLSQYLSNAACDVCDGSRLNEISRNVKIL 425

Query: 424 DTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLSRSA 483
           D  +  I  +SI DA  +++ L LEG + +I +K+ KEI +RL FLV+VGLNYL+L+RSA
Sbjct: 426 DHTISQITRMSIGDAAHYYEHLHLEGAKGEIGDKIFKEIRERLHFLVSVGLNYLSLARSA 485

Query: 484 ETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVV 543
           ETLSGGEAQRIRLASQIGAGL+GVMYVLDEPSIGLHQRDN+RLLQTL  LR+LGNTVLVV
Sbjct: 486 ETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVV 545

Query: 544 EHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVPEQR 603
           EHDEDAIR ADH+IDIGPGAGVHGG V+AEG  +E+  + +SLTG+YLSG  KIAVP+QR
Sbjct: 546 EHDEDAIRAADHIIDIGPGAGVHGGYVIAEGTADELCQHKDSLTGKYLSGELKIAVPQQR 605

Query: 604 T-PKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALN 662
             P   +K ++L GA G+NLKNVDL+IP+G+ TCVTGVSGSGKSTLIN T   +A T LN
Sbjct: 606 VQPPKPEKQIKLLGASGHNLKNVDLTIPLGVMTCVTGVSGSGKSTLINRTLLPLAATQLN 665

Query: 663 GATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRS 722
           GATT TP  + SI GL+  DKV+DIDQSPIGRTPRSNPATYTG+FTPIRELFA TQE+++
Sbjct: 666 GATTLTPEKFDSIDGLQFLDKVVDIDQSPIGRTPRSNPATYTGVFTPIRELFAQTQEAKA 725

Query: 723 RGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGK 782
           RGY  GRFSFNV+GGRCEAC+GDG+IKV MHFLPD+YVPCD C GKRYNRETLEV YKGK
Sbjct: 726 RGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVPCDACHGKRYNRETLEVGYKGK 785

Query: 783 TIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARE 842
            I +VL+MTVEDA  FF+ +PVI R+L+TL  VGL YIRLGQSATTLSGGEAQRVKLARE
Sbjct: 786 NISDVLEMTVEDAAAFFEAIPVIHRRLETLTQVGLGYIRLGQSATTLSGGEAQRVKLARE 845

Query: 843 LSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIID 902
           L+KRDTGKTLY+LDEPTTGLHFHDI +LL +LH LR+ GNT+VVIEHNLDVIKTADW++D
Sbjct: 846 LAKRDTGKTLYVLDEPTTGLHFHDIAKLLDILHELRNKGNTIVVIEHNLDVIKTADWVVD 905

Query: 903 LGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
           LGPEGG GGG IIA GTPE+VA++  SHT RFLKPLL
Sbjct: 906 LGPEGGSGGGQIIATGTPEEVAEVAISHTGRFLKPLL 942



 Score =  140 bits (354), Expect = 3e-37
 Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 15/194 (7%)

Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
           PC +C G R   E   V      +  ++E+++ DA  FF+ + +              I+
Sbjct: 764 PCDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAAFFEAIPV--------------IH 809

Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
            RL+ L  VGL Y+ L +SA TLSGGEAQR++LA ++     G  +YVLDEP+ GLH  D
Sbjct: 810 RRLETLTQVGLGYIRLGQSATTLSGGEAQRVKLARELAKRDTGKTLYVLDEPTTGLHFHD 869

Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
             +LL  L  LRN GNT++V+EH+ D I+ AD V+D+GP  G  GG ++A G  EE+   
Sbjct: 870 IAKLLDILHELRNKGNTIVVIEHNLDVIKTADWVVDLGPEGGSGGGQIIATGTPEEVAEV 929

Query: 583 PNSLTGQYLSGVKK 596
             S TG++L  + K
Sbjct: 930 AISHTGRFLKPLLK 943



 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)

Query: 3   KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           +I++ GA  HNLKN++LTIP   +  +TG+SGSGKS+L   TL      +   + +    
Sbjct: 614 QIKLLGASGHNLKNVDLTIPLGVMTCVTGVSGSGKSTLINRTLLPLAATQLNGATTLTPE 673

Query: 63  QFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPR 119
           +F S      +D ++ L   + I+Q      PRS   T T V+  +R L+A+  E +
Sbjct: 674 KFDS------IDGLQFLDKVVDIDQSPIGRTPRSNPATYTGVFTPIRELFAQTQEAK 724