Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 888 a.a., UvrABC system protein A from Acinetobacter radioresistens SK82

 Score =  486 bits (1252), Expect = e-141
 Identities = 284/739 (38%), Positives = 399/739 (53%), Gaps = 76/739 (10%)

Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
           FS N P GACPTC GLG         ++ D  LS+ + AI  W     ++ Q L  +   
Sbjct: 145 FSPNTPQGACPTCHGLGHIYEVTESTMVPDPTLSIRERAIASWPPA--WHGQNLRDILVT 202

Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
             +DV  P+  L +  ++ IL       +           +  ++ K  P     F G  
Sbjct: 203 LGYDVDRPWKDLPQSDRDWILFTEETPTVPVYAGLSPAETQSALKRKLEPSYMGTFTGAR 262

Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIAD 437
             +   + +T+S  +++ +++++  K C SC G RLK EA ++      +   ++LS+ D
Sbjct: 263 RYVLHTFANTQSTLMKKRVSRFMEGKICPSCHGKRLKPEALSITFAGVDIGEFMQLSL-D 321

Query: 438 ALTFFQE---------------------------------------------LKLEGQRA 452
            LT   E                                               L  ++ 
Sbjct: 322 KLTCLLEPIVLGNFDAHDAGEKTNNKVTQLDRSERATTGRAVHSVSPDVRRTSALSDEKK 381

Query: 453 QIAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLD 512
             A+++   +  RL  L  +GL YL L R+  TLS GE QR+RLA+Q+ + L GV+YVLD
Sbjct: 382 IAAQRLANGVVGRLNQLRQLGLGYLTLDRATPTLSAGELQRLRLATQLSSMLFGVVYVLD 441

Query: 513 EPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVA 572
           EPS GLH  D++ L  +L  LR+ GN+V VVEHD + +R A  ++D+GP AG  GG ++ 
Sbjct: 442 EPSAGLHPSDSQSLYDSLDKLRDAGNSVFVVEHDLELMRRAQWLVDVGPDAGEQGGNILY 501

Query: 573 EGNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVG 632
            G  + +     S T  YL     +     RTP      +EL     +NL N+D  IP+G
Sbjct: 502 SGVPQGLSEISASRTASYLFNKIPVTQSYGRTPSG---WLELNNIYRHNLHNIDARIPLG 558

Query: 633 LFTCVTGVSGSGKSTLINDTFFKIA---------------HTALNGATTATPAPYRSIQG 677
           + T VTG+SGSGKS+L++    ++                +  LN     T     S+ G
Sbjct: 559 VLTAVTGISGSGKSSLVSQALPELVLSYLGNESETENNNENNPLNEGMLVTEVTQGSLAG 618

Query: 678 -LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRG 736
            +E   +++ +DQ PIGRTPRSN ATYTG+F  +R+LFAGT E+R   Y  GRFSFNV  
Sbjct: 619 DVEAIQRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAGTPEARQAHYDAGRFSFNVAK 678

Query: 737 GRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAR 796
           GRCE C+G+G + VE+ F+P VY PC  C G RYN +TL++R+ G+ I EVL MTV +AR
Sbjct: 679 GRCETCEGEGFVSVELLFMPSVYAPCPTCHGARYNDDTLKIRWNGRNIAEVLGMTVNEAR 738

Query: 797 EFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILD 856
           +FFD    IAR LQ L ++GL Y+RLGQ AT LSGGEAQR+KLA EL +   G TLYILD
Sbjct: 739 DFFDGEVSIARSLQLLKEIGLGYLRLGQPATELSGGEAQRIKLATELQRNQRGNTLYILD 798

Query: 857 EPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIA 916
           EPTTGLH  D+ +LL  L RL D GNTVV+IEH++  +  ADW+ID+GP  G  GG I+ 
Sbjct: 799 EPTTGLHPSDVDRLLVQLQRLVDAGNTVVMIEHDMRAVAQADWVIDVGPGAGNAGGNIVV 858

Query: 917 EGTPEDVAQIEASHTARFL 935
            GTP+ + + + S TA +L
Sbjct: 859 AGTPKQITENQDSRTAPYL 877



 Score =  129 bits (325), Expect = 6e-34
 Identities = 64/130 (49%), Positives = 96/130 (73%), Gaps = 2/130 (1%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           IEVRGAR HNLK+++++IPR+ L+V +G+SGSGKSSLAF T++AE QRRY ES++ YAR+
Sbjct: 19  IEVRGAREHNLKDVDVSIPRNALVVFSGVSGSGKSSLAFGTIFAEAQRRYFESVAPYARR 78

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
            +     PDVD I+GL PA++++Q+  + N RS+VG++T + + +R++Y+R G    P  
Sbjct: 79  LIDQAGVPDVDAIDGLPPAVALQQQRGASNTRSSVGSVTTLSNLVRMIYSRAG--AYPAD 136

Query: 124 QVPLKAQTIS 133
           Q  L A+  S
Sbjct: 137 QPMLYAEDFS 146



 Score = 55.5 bits (132), Expect = 2e-11
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTL----------YAEGQRRY 53
           +E+     HNL NI+  IP   L  +TG+SGSGKSSL    L           +E +   
Sbjct: 538 LELNNIYRHNLHNIDARIPLGVLTAVTGISGSGKSSLVSQALPELVLSYLGNESETENNN 597

Query: 54  VESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
             +          + +      +E +   + ++QK     PRS + T T ++D++R L+A
Sbjct: 598 ENNPLNEGMLVTEVTQGSLAGDVEAIQRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFA 657

Query: 114 RVGEPR 119
              E R
Sbjct: 658 GTPEAR 663



 Score = 52.0 bits (123), Expect = 2e-10
 Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 10/156 (6%)

Query: 612 VELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH------TALNGAT 665
           +E++GA  +NLK+VD+SIP       +GVSGSGKS+L   T F  A        A     
Sbjct: 19  IEVRGAREHNLKDVDVSIPRNALVVFSGVSGSGKSSLAFGTIFAEAQRRYFESVAPYARR 78

Query: 666 TATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELF--AGTQESRSR 723
               A    +  ++     + + Q       RS+  + T +   +R ++  AG   +   
Sbjct: 79  LIDQAGVPDVDAIDGLPPAVALQQQRGASNTRSSVGSVTTLSNLVRMIYSRAGAYPADQP 138

Query: 724 GYQPGRFSFNVRGGRCEACQGDGVI--KVEMHFLPD 757
                 FS N   G C  C G G I    E   +PD
Sbjct: 139 MLYAEDFSPNTPQGACPTCHGLGHIYEVTESTMVPD 174