Pairwise Alignments

Query, 240 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score = 75.9 bits (185), Expect = 6e-19
 Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 26/223 (11%)

Query: 20  VKPFTEHDKVILRSYEAVVDGIASLIGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSP 79
           +K  + +D  ++   E + +G++    PFCE+VLH L D   S + I N   +GR  G P
Sbjct: 1   MKNTSPNDTHLISQLEQIAEGLSKTFSPFCEVVLHDLRDPQHSILAIHN-NLSGRAAGDP 59

Query: 80  ITDMALKMLRDIEGSERNFSRSYFTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDAP 139
            T++ L  + D E  +     +Y  +   G  +KS ++ I+      +  LC+NV+L   
Sbjct: 60  TTELGLARIADPEYPQ--VIANYQNQFSDGRQVKSTSIGIKGAGGEYVAALCMNVDLSL- 116

Query: 140 FSQVLKSFMPTQEAQEAASSVNFASDVEEL-----------VDQTVERTIEEINGDKSVS 188
                  F   Q   E   SV+    +E L           +DQ   R        K+  
Sbjct: 117 -------FRGLQGMLEQFGSVSGDKLIESLDPSGADVIRARIDQFAARLATTPRALKAAD 169

Query: 189 NNTKNRQIVMALFDKGIFDIKDAINRVADRLNISKHTVYLYIR 231
                R ++  L D G  DI+ A+  VA  L +S+  VY Y +
Sbjct: 170 ----RRVLMQELKDSGCLDIRRAMETVASHLGVSRAAVYTYAK 208