Pairwise Alignments

Query, 240 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., PAS domain-containing protein from Serratia liquefaciens MT49

 Score = 66.2 bits (160), Expect = 5e-16
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 13/207 (6%)

Query: 31  LRSYEAVVDGIASLIGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSPITDMALKMLRD 90
           L   ++V DGIA+L  P  E+V+H   DL+T+ +       + R+ G    D  L+   D
Sbjct: 8   LELLQSVADGIAALFFPNVEVVIH---DLSTNKVAYLANNLSKRKPGD---DAGLEDF-D 60

Query: 91  IEGSERNFSRSYFTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDAPFSQV---LKSF 147
           I+ SE   +  Y      G  M+S+++A ++ +     LLCIN++  A F      L  F
Sbjct: 61  ID-SEGQVTGPYEKLNWDGKKMRSVSIAAKDEQGVPRYLLCINLST-ATFEDARNALDMF 118

Query: 148 MPTQEAQEAASSVNFASDVEELVDQTVERTIEEINGDKSVSNNTKNRQIVMALFDKGIFD 207
           +     Q     + F  D +E ++  +   I + N         + +Q+V+ L+++G F 
Sbjct: 119 LSVTRLQPQPQQL-FKDDWQEKINTFLHEWIRQQNASLGSLTREQKKQLVIDLYNEGAFK 177

Query: 208 IKDAINRVADRLNISKHTVYLYIRQRK 234
            K A + +A+ L++ + TVY Y+++ K
Sbjct: 178 AKSAADYIANVLSLGRATVYKYLKELK 204