Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., N-acetylmuramoyl-L-alanine amidase AmiC from Xanthobacter sp. DMC5

 Score =  141 bits (356), Expect = 5e-38
 Identities = 115/425 (27%), Positives = 197/425 (46%), Gaps = 37/425 (8%)

Query: 19  LLFGFVLLAIAPQTWAN-----------VLEGVRVWPSPDETRVVLDVKSEVDYSYFTLS 67
           +LF FV +   P  WA            +    R+      TR+++D+     +  FTL+
Sbjct: 27  ILFTFVAVVACP-AWAQGEGSAPALAPALAREARLAGDAKRTRLIVDLDRAPAFRAFTLA 85

Query: 68  SPERLVVDLKQSTSRAKLPVNVTESGILSKVRASS-PPEKSTFRLVFELKQKTTPTLFKL 126
           +P R+++DL   T   K        G+++  R     P K+  R+V E+          +
Sbjct: 86  NPPRVILDLSDVTFALKPDAGQLRRGLVTAYRFGVFAPGKA--RMVLEVSGPVAIDKAFV 143

Query: 127 APTPGGQYGHRLVIDMPHGKVSESSSASTPSSPAQVSKDASQLL----GNDDIVVAIDAG 182
                 Q   RLV+D+        + +    +  + +  A+ +     G+   V+ ID G
Sbjct: 144 LDAVDDQPA-RLVVDLVKADADAFARSIATEAEQRTALPAAAVAAPPAGDTRPVIVIDPG 202

Query: 183 HGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARR 242
           HGG D G+ G +   EK I L  +  L ++L    G + VLTR  D F+ L  R  IAR 
Sbjct: 203 HGGIDSGTSGYSAFVEKTIVLETALALRERLEKAGGYRVVLTRSTDTFIPLADRVRIART 262

Query: 243 SKAHLLVSVHADAF--HTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLS 300
           ++A L +S+HADA      + RG SV+ L+   ++TE A  + + E +++L+ G    + 
Sbjct: 263 NRADLFISIHADALARGDGRARGASVYTLSETASDTESAH-LADKENKADLIAG----VD 317

Query: 301 KTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIP 360
            ++    V+  L+DL    ++      A  ++  M     +H T   +A   VL++ D+P
Sbjct: 318 LSDETDEVAGILVDLAQRETRNFSALFARTLVGSMKAATRMHGTPLKSAGFRVLRAHDVP 377

Query: 361 SVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQKHKV 420
           SVLVE G++S+P + K L   + +D++A A+A  + Q+          FA++G A    V
Sbjct: 378 SVLVELGYMSSPDDLKQLTSEAGRDRMADAIAAGVTQF----------FAHKGAAGHQAV 427

Query: 421 QRGES 425
           + G S
Sbjct: 428 EDGAS 432