Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score =  331 bits (848), Expect = 5e-95
 Identities = 188/450 (41%), Positives = 272/450 (60%), Gaps = 26/450 (5%)

Query: 34  ANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESG 93
           A+ ++ VR+W +PD TR+V D+   V +S FTL++P+RLV+D+  +T  A L V+   + 
Sbjct: 24  ASQVKSVRLWRAPDNTRLVFDLSGPVQHSVFTLTAPDRLVIDINGATLAAPLKVSTANTP 83

Query: 94  ILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSES--- 150
           I +   A   P  +  R+V +LK+  TP  F LAP    QYG+RLV+D+       +   
Sbjct: 84  ITAMRSAQRTP--TDLRVVIDLKKVVTPKSFSLAPN--AQYGNRLVVDLFDNAADANPPP 139

Query: 151 ----SSASTPSSPAQVSKDASQL-------LGNDDIVVAIDAGHGGEDPGSIGPTRKYEK 199
               S A+ P+ P   S+   +L        G  DI+V IDAGHGGEDPG+ G   ++EK
Sbjct: 140 APPPSVATVPAVPVNPSQPQVKLPPPPPAPAGKRDIIVVIDAGHGGEDPGASGSRGQHEK 199

Query: 200 DITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTP 259
           D+ L+++++L  Q+NA+ G +A LTR GDYF+ L  RTEIAR+  A L VS+HADA  + 
Sbjct: 200 DVVLAIARELQRQINAMKGYRAELTRTGDYFIPLRGRTEIARKKGADLFVSIHADAAPSA 259

Query: 260 QPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSH 319
              G SVF L+ R A +E ARW+ + E +S+L+GGAG V S  + D+ ++  LLDL  + 
Sbjct: 260 AAFGASVFALSDRGATSETARWLADSENRSDLIGGAGNV-SLDDKDKMLAGVLLDLSMTA 318

Query: 320 SQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLI 379
           S      V   +L  +G+V  LHK     A   VLKSPDIPS+LVETGFISN +E   L 
Sbjct: 319 SLTSSLNVGQKVLSNIGRVTPLHKQRVEQAGFMVLKSPDIPSILVETGFISNSNEASKLA 378

Query: 380 QRSHQDKLARALATAIVQYFEDNPPEGTLFA---NRGK----AQKHKVQRGESIGLIANQ 432
             SHQ  LAR+++  + Q+F+ NPP GT  A   + GK     + H+VQ G+++ ++A +
Sbjct: 379 TGSHQQALARSISAGVRQFFQQNPPPGTYIAWLRDSGKIAQGPRDHRVQPGDTLAMLAVR 438

Query: 433 YGVSVDALKKANNLKSSTISVGQLLTIPAS 462
           + VS   L+ ANNLK+  + VGQ+LTIP +
Sbjct: 439 FQVSAATLRSANNLKTDELKVGQVLTIPGT 468



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           R H+VQ G+ L+ +A ++ VS  ++R AN L+TD+L VGQ L IP
Sbjct: 422 RDHRVQPGDTLAMLAVRFQVSAATLRSANNLKTDELKVGQVLTIP 466



 Score = 41.2 bits (95), Expect = 9e-08
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 484 HVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525
           H V+ GD L  LA  ++VS A+++  NNLK+D L +GQ L I
Sbjct: 424 HRVQPGDTLAMLAVRFQVSAATLRSANNLKTDELKVGQVLTI 465