Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Variovorax sp. SCN45

 Score =  191 bits (485), Expect = 6e-53
 Identities = 113/259 (43%), Positives = 154/259 (59%), Gaps = 11/259 (4%)

Query: 153 ASTPSSPAQVSKDASQLLGNDD--IVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLA 210
           A +P  P    +         D  I+VA+D GHGGEDPG+IGP    EKDI L V+ +L 
Sbjct: 235 APSPPPPVAAPRGGPATASRTDRIIIVALDPGHGGEDPGAIGPNGTREKDIVLQVAHRLR 294

Query: 211 DQLNA--VPG--MKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSV 266
           +++NA  V G  M+A LTR  D+FV L  R + ARR +A L VS+HADAF TP  RG SV
Sbjct: 295 ERINAGSVNGSPMRAFLTRDADFFVPLGVRVQKARRVQADLFVSIHADAFTTPAARGASV 354

Query: 267 FVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYK 326
           F L+   A++  ARW+ N E +++ +GG    ++   ++  V + LLD+  +    +  K
Sbjct: 355 FALSQSGASSSAARWMANKENEADKVGG----VNVGGHEAQVQRALLDMSTTAQINDSLK 410

Query: 327 VATNILREMGKV-AHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQD 385
           +   +L E+  + A LHK +   A  AVLK+PDIPSVLVET FISNP EE  L +  +Q+
Sbjct: 411 LGGAMLGEIKNIGARLHKGQVEQAGFAVLKAPDIPSVLVETAFISNPEEEANLRRVDYQE 470

Query: 386 KLARALATAIVQYFEDNPP 404
            LA AL   I +YF  NPP
Sbjct: 471 SLADALMRGIQRYFAQNPP 489



 Score = 58.9 bits (141), Expect = 5e-13
 Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 11  LNVSRFVFLLFGFVLLAIAPQTWAN--VLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSS 68
           + + R V L  G + L +     A    +  VRVWP+ D TRV ++  + ++     + S
Sbjct: 4   VGLKRRVLLQGGSIALMLGVHQIARGATILAVRVWPAADYTRVTIESDARLNSQQLVVGS 63

Query: 69  PERLVVDLKQSTSRAKLPVNVTESGILSKVRASSP---------PEKSTFRLVFELKQKT 119
           P RL VD++       + +N     ++ K++   P               R+VF+LKQ  
Sbjct: 64  PPRLAVDIE------GIDLNPELRELVGKIKPGDPYINGLRVGQNAPKVVRIVFDLKQAV 117

Query: 120 TPTLFKLAPTPGGQYGHRLVIDM 142
            P +F LAP     Y HRLV+D+
Sbjct: 118 VPQVFSLAPV--AAYKHRLVLDL 138