Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas putida KT2440

 Score =  337 bits (865), Expect = 5e-97
 Identities = 198/474 (41%), Positives = 282/474 (59%), Gaps = 30/474 (6%)

Query: 15  RFVFLLFGFVLLAIAPQTWA-NVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLV 73
           R +  + G +L  +  +  A   ++ +R+W +PD TR+V D+   V +S FTLS+P+RLV
Sbjct: 4   RALVAIVGLLLTTVTVEALAVTQVKSMRLWRAPDNTRLVFDLSGPVQHSVFTLSAPDRLV 63

Query: 74  VDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQ 133
           +D+  +T  A L V  + + I S   A   P  +  R+V +LK+  TP  F LAP    Q
Sbjct: 64  IDINGATLAAPLNVATSNTPISSVRSAQRTP--TDLRVVVDLKKSVTPKSFTLAPN--AQ 119

Query: 134 YGHRLVIDM-------------PHGKVSESSSASTPSSPAQVSKDASQL----LGNDDIV 176
           YG+RLV+D+             P       + A+TP+ P   ++ A +L     G  DIV
Sbjct: 120 YGNRLVVDLYDQEADAIAASAPPPAPAPVQTPATTPAVPVTPAQPAIKLPPVPSGKRDIV 179

Query: 177 VAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKR 236
           VAIDAGHGGEDPG+ G   ++EKDI L ++K+L  Q+N+  G +A LTR GDYF+ L KR
Sbjct: 180 VAIDAGHGGEDPGASGSRGQHEKDIVLQIAKELQRQINSEKGFRAELTRTGDYFIPLRKR 239

Query: 237 TEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAG 296
           TEIAR+  A L +S+HADA  +    G SVF L+ R A +E ARW+ + E +S+L+GGAG
Sbjct: 240 TEIARKKGADLFISIHADAAPSRAAFGASVFALSDRGATSETARWLADTENRSDLIGGAG 299

Query: 297 EVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKS 356
            V S  + DR ++  LLDL  + +      V   +L  MG+V  LHK     A   VLKS
Sbjct: 300 NV-SLDDKDRMLAGVLLDLSMTATLSSSLNVGQKVLGNMGRVTSLHKQRVEQAGFMVLKS 358

Query: 357 PDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFA---NRG 413
           PDIPS+LVETGFISN +E   L   SHQ  LAR++ T + QYF+ NPP GT  A   + G
Sbjct: 359 PDIPSILVETGFISNNNEAAKLASSSHQQALARSIRTGVHQYFQQNPPPGTYIAWLRDTG 418

Query: 414 K----AQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPASS 463
           K     ++H V+ GE++ ++A +Y VSV +L+  N+LK+  + VGQ L +PA++
Sbjct: 419 KIAAGPREHTVRPGETLAMLAVRYQVSVASLRSINSLKTDELKVGQRLDVPATT 472



 Score = 48.5 bits (114), Expect = 6e-10
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           R+H V+ GE L+ +A +Y VSV S+R  N L+TD+L VGQ+L +P
Sbjct: 425 REHTVRPGETLAMLAVRYQVSVASLRSINSLKTDELKVGQRLDVP 469



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 484 HVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525
           H V+ G+ L  LA  Y+VSVAS++  N+LK+D L +GQ+L +
Sbjct: 427 HTVRPGETLAMLAVRYQVSVASLRSINSLKTDELKVGQRLDV 468