Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 564 a.a., N-acetylmuramoyl-L-alanine amidase from Magnetospirillum magneticum AMB-1

 Score =  148 bits (373), Expect = 7e-40
 Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 5/227 (2%)

Query: 176 VVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNK 235
           V+ ID GHGG DPG+ G +  YEK ITL+++++L   L      +  LTR  D F+ L +
Sbjct: 337 VIVIDPGHGGVDPGATGVSGTYEKHITLAMARELKAMLERNGRYRVHLTRDRDVFIRLRE 396

Query: 236 RTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGA 295
           R  IAR   A L +S+HADA  +PQ RG SV+ L +R A+   A+ +   E +++L+ G 
Sbjct: 397 RIAIARAQGADLFISLHADAVQSPQIRGLSVYTL-SRNASDAEAQALAEKENKADLIAG- 454

Query: 296 GEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLK 355
              +  T+   +V+  L+DL    +       AT ++ E+G+   L       A  AVLK
Sbjct: 455 ---IDLTHESADVANILIDLAQRETMNRSAGFATELVDEVGQEMDLLGNTHRFAGFAVLK 511

Query: 356 SPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDN 402
           +PD+P+VLVE G++SN SEEK+L Q  ++ +LA+++A A+ ++F  N
Sbjct: 512 APDVPAVLVEMGYLSNESEEKMLRQPQYRARLAKSIAKAVERFFPPN 558



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 49  TRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESGILSKVRAS-SPPEKS 107
           TR VLD+  +V +    L+ P R+ +DL  +        + +  G +SK   S +     
Sbjct: 58  TRFVLDLSDQVAFKITPLAEPYRIAIDLSGA--------DYSGPGGISKPWGSVNSMHLD 109

Query: 108 TFRLVFEL-KQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSASTPSSPA 160
             R+V +L K     + F +AP  G   GHRLV+D+      E+  A+  S PA
Sbjct: 110 GGRIVLDLRKPALVKSAFIIAPRDG--MGHRLVVDLAE-TTREAFLAAAGSGPA 160