Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Serratia liquefaciens MT49

 Score =  336 bits (861), Expect = 2e-96
 Identities = 218/611 (35%), Positives = 332/611 (54%), Gaps = 91/611 (14%)

Query: 26  LAIAPQTWANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKL 85
           L  A    A+ L  ++V  +  E  V +      DY++F L  P+R+V+D+ Q      L
Sbjct: 20  LGAASALAASSLSDIKVTNAQREATVSVSFTGPPDYAFFPLHGPDRVVLDVNQKGKVGGL 79

Query: 86  PVNVTESGILSKVRASSPPEKSTFRLVFELKQK------------------------TTP 121
           P+N +   ++  +R+S+P +  + RLVF+L Q+                        +  
Sbjct: 80  PLNFSGQNLVKSIRSSAPKDAQSVRLVFDLTQRAKTRVATRQNGSVYTVVFTIAAEGSAN 139

Query: 122 TLFKLAPTPGGQYGHR------LVIDMPHGK---VSESSSASTP--SSPAQVSKDASQLL 170
           T  + APTP     +       +V+  P  +   V  + S S P  + P  V+  AS++ 
Sbjct: 140 TTVRKAPTPAPVVVNPPTRKAPVVVSEPEPEPAPVRRAPSGSNPFTNKPTVVAGTASEVT 199

Query: 171 ---------GNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKA 221
                      D +VVAIDAGHGG+DPG+IGP    EK++T++++++L   L+A P  K 
Sbjct: 200 PRSSRVSAGSGDRVVVAIDAGHGGQDPGAIGPNGLKEKNVTIAIARRLQALLDADPQFKP 259

Query: 222 VLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARW 281
           VLTR GDYF+++  R+++AR+  A++LVS+HADA       G SV+VL+ RRAN+E+A W
Sbjct: 260 VLTRNGDYFISVMGRSDVARKQGANVLVSIHADAAPNRSANGASVWVLSNRRANSEMAGW 319

Query: 282 VENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHL 341
           +E HE+QSELLGGAG++L+ +  D  +SQ +LDLQF HSQ+ GY VA  +L+++  V  L
Sbjct: 320 LEQHEKQSELLGGAGDLLANSQADPYLSQAVLDLQFGHSQRVGYDVAVKVLQQLQSVGSL 379

Query: 342 HKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFED 401
           HK  P +ASL VL+SPDIPS+LVETGFISN +EE+LL   ++Q+K+ARA+   +  YF  
Sbjct: 380 HKRRPEHASLGVLRSPDIPSLLVETGFISNSTEERLLGSSAYQEKIARAIHNGLRGYFLA 439

Query: 402 NPPEGTLFANRGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPA 461
           +P +             KV+                  L  A  + SST  V Q      
Sbjct: 440 HPLQAD----------PKVENRP---------------LDVAAAVNSSTQDVSQ------ 468

Query: 462 SSAPNPVPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQ 521
              P P+     +  +  +T  HVVK  + L  +A +Y  ++A+++  N LK D + +GQ
Sbjct: 469 ---PAPIVSSAGSRRISGKTQIHVVKRAETLSGIADSYGTTMAALRDLNKLKKDGVWVGQ 525

Query: 522 KLKI-------TVSL--KDKPLRK----HKVQRGEFLSKIADQYNVSVDSIRQANQLRTD 568
           +LK+       TVS   K KP  K    HKV RG+ LS IA +Y VS+  +++ N+L++D
Sbjct: 526 RLKVPAGKTAATVSTVAKAKPSVKKPSRHKVTRGDTLSSIATRYGVSISDLKRVNKLKSD 585

Query: 569 QLLVGQQLIIP 579
              + + L IP
Sbjct: 586 VAPLDRTLTIP 596