Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., putative amidase (VIMSS) from Escherichia coli BW25113

 Score =  230 bits (586), Expect = 1e-64
 Identities = 143/413 (34%), Positives = 216/413 (52%), Gaps = 41/413 (9%)

Query: 25  LLAIAPQTWANVLE--GVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSR 82
           LL+++  + A V +   VRVWP+   TRV ++   ++ Y  F LS+PER+VVD++     
Sbjct: 22  LLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKYKQFALSNPERVVVDIED---- 77

Query: 83  AKLPVNVTESGILSKVRASSPPEKS---------TFRLVFELKQKTTPTLFKLAPTPGGQ 133
             + +N    G+ +++RA  P  KS         T R+VFELKQ   P LF LAP  G  
Sbjct: 78  --VNLNSVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQNVKPQLFALAPVAG-- 133

Query: 134 YGHRLVIDMPHGKVSE-------------SSSASTPSSPAQVSKDASQLLGNDDIVVAID 180
           +  RLV+D+      +                      PAQ      +   +  IV+ +D
Sbjct: 134 FKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLD 193

Query: 181 AGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIA 240
            GHGGED G++G  +  EKD+ L ++++L   +     MK  +TR  D F+ L  R   A
Sbjct: 194 PGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKA 253

Query: 241 RRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLS 300
           ++ +A L VS+HADAF + QP G SVF L+T+ A +  A+++   +  S+L+GG  +   
Sbjct: 254 QKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDLIGGVSK--- 310

Query: 301 KTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIP 360
             + DR V  T+ D+  S +  +  K    +L ++GK+  LHK +   A  AVLK+PDIP
Sbjct: 311 --SGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIP 368

Query: 361 SVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRG 413
           S+LVET FISN  EE+ L   + Q ++A ++   I  YF D    G   A RG
Sbjct: 369 SILVETAFISNVEEERKLKTATFQQEVAESILAGIKAYFAD----GATLARRG 417