Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Dickeya dianthicola ME23

 Score =  357 bits (916), Expect = e-103
 Identities = 214/552 (38%), Positives = 318/552 (57%), Gaps = 42/552 (7%)

Query: 15  RFVFLLFGFVLLAIAPQTWANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVV 74
           R +  L G VL+   P  WA+ L  +RV  +  E  V L    + +Y YF+L++P R+V+
Sbjct: 4   RLMKALLGLVLMLSWP-LWASSLTDIRVNNAASEAVVTLSFSGQPEYDYFSLNNPNRVVI 62

Query: 75  DLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFK----LAPTP 130
           D+ +S     LP+      +++++R S+  +  + RLV +L QK      K     A T 
Sbjct: 63  DISRSGMMKGLPLAFNGQNLIARIRTSNAKDPKSLRLVLDLTQKVQIRAVKEGNGAAFTL 122

Query: 131 GGQY---GHRLVID--MPHGKVSESSSASTPSSPAQVSKDASQLLGNDDIVVAIDAGHGG 185
            G+      + V     P      +      S+ A+ ++ + ++   + I+VAIDAGHGG
Sbjct: 123 TGERKTTARKAVAQPVQPSAPAGRNPLVPQTSAAAEPTRVSGRVGSGEKIIVAIDAGHGG 182

Query: 186 EDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKA 245
           +DPG+ GP   +EK++T+S+++KL   ++A P  K VLTR GDYF+++  R+++AR+  A
Sbjct: 183 QDPGASGPGGLHEKNVTISIARKLRAIMSADPAFKPVLTRDGDYFISVMGRSDVARKQGA 242

Query: 246 HLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNND 305
           +LLVS+HADA       G SV+VL+ RRAN+E+A W+E HE+QSELLGGAG++L+ +  D
Sbjct: 243 NLLVSIHADAAPNRGASGASVWVLSNRRANSEMANWLEQHEKQSELLGGAGDLLANSAAD 302

Query: 306 RNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVE 365
             +SQ +LDLQF HSQ+ GY VA  +LRE+ +V  LHK  P +ASL VL+SPDIPS+LVE
Sbjct: 303 PYLSQAVLDLQFGHSQRVGYDVAMKVLRELQRVGSLHKRRPEHASLGVLRSPDIPSLLVE 362

Query: 366 TGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNP----------PEGTLFANR--- 412
           TGFISNPSEE+LL    +Q+K+A A+   +  YF+ +P          P G+        
Sbjct: 363 TGFISNPSEERLLGSNEYQEKIANAIYQGLRSYFQTHPLQNIPKQENRPLGSQTVKNATA 422

Query: 413 --------GKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPA--- 461
                   G   +H V  GE++  IA  YGVS+ A+++AN LK   + VGQ L IP+   
Sbjct: 423 TEPAQIATGATVRHTVATGETLSGIAAHYGVSMGAIREANRLKKDVVWVGQRLKIPSGDL 482

Query: 462 -----SSAPNPVPVPVMAN---PVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLK 513
                +SA    PV   ++         I H V  GD L  +A+ Y VS+ +I++ NN+ 
Sbjct: 483 SAVKTASAAKRKPVAAASSSGVKKSATVIKHKVARGDTLSAIASQYGVSMKAIQQANNMS 542

Query: 514 SDTLVLGQKLKI 525
           S T+ LGQ L I
Sbjct: 543 SGTVQLGQTLII 554



 Score = 57.0 bits (136), Expect = 2e-12
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 417 KHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS 462
           KHKV RG+++  IA+QYGVS+ A+++ANN+ S T+ +GQ L IP++
Sbjct: 512 KHKVARGDTLSAIASQYGVSMKAIQQANNMSSGTVQLGQTLIIPSA 557