Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., N-acetylmuramoyl-L-alanine amidase AmiA from Azospirillum sp. SherDot2

 Score =  137 bits (344), Expect = 7e-37
 Identities = 95/274 (34%), Positives = 140/274 (51%), Gaps = 15/274 (5%)

Query: 123 LFKLAPTPGGQYGHRLVIDMPHGKVSESSSASTPS-SPAQVSKDASQLLGNDDIVVAIDA 181
           L KL  T  G  G  L +  P G  S  +S   P   PA  +   S+L       V +D 
Sbjct: 11  LSKLWLTAFGAAG--LALAQPLGSGSAQASGRRPDRKPASGTSSRSRL-------VMLDP 61

Query: 182 GHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIAR 241
           GHGG DPG+IG    +EK++TL +++ +A  L    G+   LTRR D F+ L+ R  + R
Sbjct: 62  GHGGNDPGAIGTRGTFEKEVTLDIARDVARILAERHGVAVRLTRRDDRFLALDDRVALTR 121

Query: 242 RSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSK 301
            + A L VS+HAD+      RG S ++L+  +A+   A  +   E Q++  G  G V   
Sbjct: 122 EAGADLFVSIHADSAPNADARGLSAYILSD-KASDSFASRLAQQENQADRFGKPGAV--- 177

Query: 302 TNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPS 361
               R V   L+DL   H++         ++   GK   L +     A+ AVLK+PD+PS
Sbjct: 178 -GGGRIVKDILMDLTARHTRHASLAARQILVEGAGKELRLLENPMRAANFAVLKAPDVPS 236

Query: 362 VLVETGFISNPSEEKLLIQRSHQDKLARALATAI 395
           VLVETGF+SNP +E++L   + +  ++R LA  I
Sbjct: 237 VLVETGFLSNPRDEEILRDATARRVVSRVLAREI 270