Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., N-acetylmuramoyl-L-alanine amidase from Agrobacterium fabrum C58

 Score =  159 bits (401), Expect = 3e-43
 Identities = 124/399 (31%), Positives = 196/399 (49%), Gaps = 21/399 (5%)

Query: 13  VSRFVFLLFGFV--LLAIAPQTWAN---VLEGVRVWPSPDETRVVLDVKSEVDYSYFTLS 67
           ++R    L  FV  L+++ P   A    V    R+      TR+VLD   E ++    L 
Sbjct: 20  IARLASALAFFVATLVSVVPTAHAAEPLVAHQARIIGDEARTRIVLDFAEEPEFDVHYLD 79

Query: 68  SPERLVVDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLA 127
           SP R+VVD   + + A    ++  +G+ S +R  +  E S  R+V   K+    T+ +  
Sbjct: 80  SPARIVVDFP-AVNFAFPTSDLKPTGLFSDIRFGTMGENSA-RIVLTAKKPVQVTVAETK 137

Query: 128 PTPGGQYGHRLVIDMP---HGKVSESSSASTPSSPAQVSKDA----SQLLGNDDIVVAID 180
               GQ   R V+D      GK +E        +PA V+  A     +     + V+A+D
Sbjct: 138 KGDDGQ-SFRFVLDAEITTKGKFAELVKDQQWRAPAPVTTAAITPDDKTSRPAEFVIAVD 196

Query: 181 AGHGGEDPGSIGPTR-KYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEI 239
           AGHGG D G+ G T    EK ITL+ +K+L ++LN   G+KA LTR  D F+ L++R  I
Sbjct: 197 AGHGGIDAGATGGTTGTEEKVITLTFAKELVERLNREAGIKAFLTRDSDTFLALSERVTI 256

Query: 240 ARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVL 299
           AR++ A+L +S+HAD       RG +V+ L+ R ++ +     E   +  ++ G     +
Sbjct: 257 ARQNNANLFISLHADTLKQKGIRGATVYTLSDRASDRQAQELAERENKSDQIAG-----V 311

Query: 300 SKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDI 359
           + +     V+  LLD     +Q     +A NI+        L       A   VL++ D+
Sbjct: 312 AASTEPPEVADILLDFTRRETQAFSVTLAENIVSSFEGQVGLINNPHRYAGFMVLRAHDV 371

Query: 360 PSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQY 398
           PSVL+E GF+SN  +EKLL+    + K+A  LATA+ +Y
Sbjct: 372 PSVLLELGFLSNAEDEKLLLDIEWRKKVADTLATAVGRY 410