Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  122 bits (307), Expect = 2e-32
 Identities = 113/474 (23%), Positives = 208/474 (43%), Gaps = 34/474 (7%)

Query: 19  LLICFLLPLGVLLMPIDAIPIQDLTLVQHRLLAIFLLAALLWVLEPVPVFATSILIIALE 78
           L+I  L+ +GVLL+P+ A    DL +   R+LAI   A ++W+ E V   A++I+I +L 
Sbjct: 17  LVIGVLVMVGVLLLPLPA----DLPVAGQRMLAILAFAVVVWITEAVSYEASAIMITSLM 72

Query: 79  LVMISDKGLHGFRVPDPHHPLGELLKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNN 138
             ++         + DP H +G     +   + FS+P + L  G   +A A +   LD  
Sbjct: 73  AFLLGTAP----SLQDPTHLIGSSPAISMALTGFSNPALALVAGALFIAAAMTHTGLDRR 128

Query: 139 LARVLLKPFGHQPKYIMLGLMLITSVFSMFM-SNTATTVMMLALLGPIVASAPKGDLGIK 197
           +A V L   G   + I+LG + +T + S+ + S TA +  ++ ++  +VA+         
Sbjct: 129 IALVTLTRVGTSTRGILLGAIAVTILLSLVVPSATARSACVVPIMMGVVAAFGVDKRSNI 188

Query: 198 ALVLCIPIAANTG----GIATPIGTPPNAIALQYLTGENSIDFLSWMMMGLPFVLVQLTI 253
           A  L I +A  T     GI T        +          + ++ W++ G P+ ++   +
Sbjct: 189 AAGLMIVVAQGTSIWNVGIQTAAAQNLLTVGFMDKMLGQRVSWIDWLIAGAPWAVIMSAV 248

Query: 254 AWFLLQKLFPSSQATMTLKLKGEFQR--------GWRAMLVYITFALTIVLWMTTS-WHG 304
             FL+ KL P    ++    +   Q         G +  L+ ++  L ++ W T    H 
Sbjct: 249 LLFLVIKLLPPETDSIPGGKEAVAQSLVDIGPMTGPQKRLLTVS-VLLLLAWATEGRLHP 307

Query: 305 MNTYVVAIIPLAVFTLTGI---MGKEELKQINWDVLWLVAGGIAIGIGLEQTGLAQALAH 361
            +T       L    L G+     K+   +I W  + +   GI++G  L  T   Q L  
Sbjct: 308 FDTTSTTYAGLVFLLLPGVGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQWLGS 367

Query: 362 SI----DYQSLSPMLIVIAL-SLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQVGG 416
            +        + P+ +   L + +  +   F S TA  + ++PI  A+   + +L     
Sbjct: 368 QVVAHTGLDQVGPLGVFAILGAFLIVIHLGFASATALTSALLPILIAV---LQTLPGEFN 424

Query: 417 LQALLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAKTGLVIGGIGLGIV 470
              + +++ F  S G ILP++ P N +   TG   ++  AK G+++  IG G++
Sbjct: 425 RLGMTMLLGFVMSYGFILPINAPQNMVCLGTGTFTARQFAKVGILVTLIGYGLM 478