Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., putative transporter from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 6e-11
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 330 KQINWDVLWLVAGGIAIGIGLEQTG-LAQALAHSIDYQS-LSPMLIVIALSLVCWLMANF 387
           + I+W  L L+ G +     L++TG +  A+   ++      P  I+  L  V  ++  F
Sbjct: 462 RAIHWQSLVLIVGMLPFAQALQKTGGIDLAVGGLVNVLGGAGPSAILACLFAVTAVIGLF 521

Query: 388 MSNTATANLIMPIAAAIGTSMSSLEQVG-GLQALLVVVAFSASLGMILPVSTPPNSLAYS 446
           +SNTATA L+ P+A      +S+  Q+G       + VA +AS   + PVS+P N+L   
Sbjct: 522 ISNTATAVLMAPVA------VSTAAQLGMSPYPFAMTVALAASAAFMTPVSSPVNTLVLG 575

Query: 447 TGLIESKDMAKTGLVIGGIGLGIVYLMV 474
            G     D  K G+    + + +  +MV
Sbjct: 576 PGQYRFADFVKIGVPFTVLVMLVTVVMV 603



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 16/164 (9%)

Query: 100 GELLKYTDIFSAFSSPIIILFMGGFALAIAASKYE-LDNNLARVLLKPFGHQPKYIMLGL 158
           G  +     + A     ++L +G    A A  K   +D  +  ++    G  P  I+  L
Sbjct: 452 GRCIDMNSAYRAIHWQSLVLIVGMLPFAQALQKTGGIDLAVGGLVNVLGGAGPSAILACL 511

Query: 159 MLITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIA-ANTGGIATPIG 217
             +T+V  +F+SNTAT V+M       VA +    LG+      + +A A +    TP+ 
Sbjct: 512 FAVTAVIGLFISNTATAVLMAP-----VAVSTAAQLGMSPYPFAMTVALAASAAFMTPVS 566

Query: 218 TPPNAIALQYLTGENSIDFLSWMMMGLPF-VLVQLT----IAWF 256
           +P N + L    G     F  ++ +G+PF VLV L     + WF
Sbjct: 567 SPVNTLVL----GPGQYRFADFVKIGVPFTVLVMLVTVVMVPWF 606



 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 98  PLGELLKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLG 157
           PL  +L      + FS P ++L    F +     +  +   +   + +  G+    +++ 
Sbjct: 38  PLLGILTVEQALAGFSDPNVVLIAALFVIGEGLVRTGIAYRIGEWMSERAGNSEARLLVL 97

Query: 158 LMLITSVFSMFMSNTATTVMMLALLGPIVAS-APKGDLGIKALVLCIPIAANTGGIATPI 216
           LM+  +     MS+T     ++A+  P+V S A +  L    L++ +  A    G+ + +
Sbjct: 98  LMVAVAGLGSIMSSTG----VVAIFIPVVLSIAARLQLSPSRLMMPLAFAGLISGMLSLV 153

Query: 217 GTPPNAIALQYLT--GENSIDFLSWMMMGLPFVLVQLTIAWFLLQK 260
            TPPN +    L   GE    F S+   GL  V++ L I + LL +
Sbjct: 154 ATPPNVVVHSELVRHGEAGFSFFSFTPFGL--VVLVLGIGYMLLTR 197



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 309 VVAIIPLAVFTLTGIMGKEE-LKQINWDVLWLVAGGIAIGIGLEQTGLAQALAHSIDYQS 367
           VVA++ +    L GI+  E+ L   +   + L+A    IG GL +TG+A  +   +  ++
Sbjct: 28  VVALLVILALPLLGILTVEQALAGFSDPNVVLIAALFVIGEGLVRTGIAYRIGEWMSERA 87

Query: 368 -LSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQVGGLQALLVVVAF 426
             S   +++ L +    + + MS+T    + +P+  +I   +           L++ +AF
Sbjct: 88  GNSEARLLVLLMVAVAGLGSIMSSTGVVAIFIPVVLSIAARLQLSPS-----RLMMPLAF 142

Query: 427 SASL-GMILPVSTPPNSLAYSTGLIESK------DMAKTGLVIGGIGLGIVYL 472
           +  + GM+  V+TPPN + +S  +   +           GLV+  +G+G + L
Sbjct: 143 AGLISGMLSLVATPPNVVVHSELVRHGEAGFSFFSFTPFGLVVLVLGIGYMLL 195