Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., membrane protein from Magnetospirillum magneticum AMB-1

 Score =  124 bits (311), Expect = 8e-33
 Identities = 124/485 (25%), Positives = 220/485 (45%), Gaps = 47/485 (9%)

Query: 24  LLPLGVLLMPIDAIPIQDLTLVQH----RLLAIFLLAALLWVLEPVPVFATSILIIALEL 79
           +L LGV L  + AI +  L    H    R++AI + A ++W+ E VP   ++ +I++L  
Sbjct: 37  ILGLGVALAALVAIILLPLPAGLHPAGLRMMAIMVFAVIIWMTEAVPYAVSAAVIVSLIA 96

Query: 80  VMISDKGLHGFRVPDPHHPLGELLKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNNL 139
           + +   GL G  + DP   +G         S FS+    L  G   ++ A     LD  +
Sbjct: 97  LAL---GL-GPALADPTKLMGSSKALGMALSGFSNTAFALVAGAMFISAAMMITGLDKRI 152

Query: 140 ARVLLKPFGHQPKYIMLGLMLITSVFSMFMSNTATTV--MMLALLGPIVA-SAPKGDLGI 196
           A V+L   G +   ++ G++      S  + +T   V  M+  ++G IVA    +     
Sbjct: 153 ALVILSRLGARTGRVLAGVIFTGFALSFLVPSTTARVSCMVPIVMGIIVAFGVDRRSRFA 212

Query: 197 KALVLCIPIAANTGGIATPIGTPPNAIALQYLTGE--NSIDFLSWMMMGLPFVLVQLTIA 254
             L++    A +   +        N IA+ ++  +   S+ +L W +   PF  V   I 
Sbjct: 213 AVLMIATAQADSLWNVGIKTAAAQNMIAVSFIEKQLHYSVSWLEWFVAAAPFSAVMSVIL 272

Query: 255 WFLLQKLFP-------SSQATMTLKLK--GEFQRGWRAMLVYITFALTIVLWMTTS--WH 303
           +FLL KL P         +AT+  KL   G    G + +L   T +L ++ + TT    H
Sbjct: 273 YFLLMKLLPPEVDEIEGGKATIAAKLAELGPMTAGEKKLL---TISLILLCFWTTEKVLH 329

Query: 304 GMNTYVVAIIPLAVFTLT--GIMG-KEELKQINWDVLWLVAGGIAIGIGLEQTGLAQALA 360
             +T    ++ + +  +   G+M  K+   +I W  L L   GI++G  L  TG A  +A
Sbjct: 330 DFDTSTTTMVAITLMLVPRIGVMDWKDAQARIGWGTLILFGVGISLGQCLLDTGAASWMA 389

Query: 361 HSI-------DYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQ 413
             I       ++ ++  ++ V+AL L+  +   F S T  A  ++PI  A+   + S++ 
Sbjct: 390 KYIVATFGMENFPAIG-IVAVLALFLIV-VHLGFASATGLAAAMIPIIIAV---LQSIKT 444

Query: 414 VG-GLQALLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAKTGLVIGGIGLGIVYL 472
            G  +  + ++  +  S G ILPV+ P N + Y T   +SKD  +TG+ +      I Y+
Sbjct: 445 PGINIVGMTMIAQYVVSFGFILPVNAPQNMVVYCTETFQSKDFIRTGIPL----TIIAYI 500

Query: 473 MVFLL 477
           M+ ++
Sbjct: 501 MILVM 505