Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., Putative membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  117 bits (294), Expect = 6e-31
 Identities = 106/426 (24%), Positives = 191/426 (44%), Gaps = 48/426 (11%)

Query: 50  LAIFLLAALLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIF 109
           L + + A +++V E VP+  TS +I+ + LV+                    +L     F
Sbjct: 8   LCLLVFAIVMFVWEKVPLAVTS-MIVCVALVITG------------------VLNIKQAF 48

Query: 110 SAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLMLITSVFSMFM 169
           + F    +ILF+  F +  A  +  + N +  V+ + F    K ++  +M++  + S  +
Sbjct: 49  AGFIDTNVILFVAMFIVGGALFETGMANKVGGVITR-FAKTEKQLIFTIMVVVGLMSGVL 107

Query: 170 SNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIA---LQ 226
           SNT T  +++ +   ++  A K       L++ +  AA  GG  + IG P N IA   LQ
Sbjct: 108 SNTGTAAVLIPV---VIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQSALQ 164

Query: 227 YLTGENSIDFLSWMMMGLPF----VLVQLTIAW-FLLQKLFPSSQATMTLKLKGEFQRGW 281
            + G     F  +  +GLP     +L  LTI + FL          ++ ++        W
Sbjct: 165 NIGG--GFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSHVPQW 222

Query: 282 RAMLVYITFALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMG-KEELKQINWDVLWLV 340
           +  L  +    TI+  +     G++  V   I   V  ++G++  K+  K I+   +++ 
Sbjct: 223 KQRLSLVVLIATILGMIFEKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDSQTIFIF 282

Query: 341 AGGIAIGIGLEQTGLAQALAHSIDY------QSLSPMLIVIALSLVCWLMANFMSNTATA 394
            G +A+   LE TG  + +A   DY      Q+ SP +++IA+  +  +M NFMSNTAT 
Sbjct: 283 GGTLALAKALEMTGAGKLVA---DYVIGMLGQNSSPFMLLIAVFALSVVMTNFMSNTATT 339

Query: 395 NLIMPIAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSLAYSTGLIESKD 454
            L++P++ +I   M +       +A+L+      S     P+  P N +  S G  +  D
Sbjct: 340 ALLVPVSLSIAAGMGA-----DPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKFVD 394

Query: 455 MAKTGL 460
            AK G+
Sbjct: 395 YAKAGI 400



 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 109 FSAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQ--PKYIMLGLMLITSVFS 166
           + A  S  I +F G  ALA A         +A  ++   G    P  +++ +  ++ V +
Sbjct: 271 YKAIDSQTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLIAVFALSVVMT 330

Query: 167 MFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIALQ 226
            FMSNTATT    ALL P+  S   G       VL   +   +   ATPIG P N + L 
Sbjct: 331 NFMSNTATT----ALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLS 386

Query: 227 YLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFP 263
                    F+ +   G+P ++V   ++  LL  LFP
Sbjct: 387 ----AGGYKFVDYAKAGIPLIIVSTIVSLILLPILFP 419