Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Uncharacterized transporter YfbS from Escherichia coli ECRC62

 Score = 62.0 bits (149), Expect = 6e-14
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 107 DIFSAFSS---PIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLG-LMLIT 162
           D  SA+ S   P IIL +G    A+A  K        + L+   G    ++MLG L +++
Sbjct: 457 DAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMMLGCLFVLS 516

Query: 163 SVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIA-ANTGGIATPIGTPPN 221
           +V  +F+SNTAT V+M     PI  +A K  +G+      + +A A +    TP+ +P N
Sbjct: 517 AVIGLFISNTATAVLM----APIALAAAK-TMGVSPYPFAMVVAMAASAAFMTPVSSPVN 571

Query: 222 AIALQYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFP 263
            + L    G  +  F  ++ +G+PF ++ + +   ++  LFP
Sbjct: 572 TLVL----GPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFP 609



 Score = 60.8 bits (146), Expect = 1e-13
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 314 PLAVFTLTGIMGK-------EELKQINWDVLWLVAGGIAIGIGLEQTG-LAQALAHSIDY 365
           P+A      +MGK          K I+W  + L+ G +   + L++TG +A A+   +D 
Sbjct: 440 PVAAIIACLLMGKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDI 499

Query: 366 QS-LSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQVGGLQALLVVV 424
                P +++  L ++  ++  F+SNTATA L+ PIA A   +M             +VV
Sbjct: 500 GGGYGPHMMLGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPY-----PFAMVV 554

Query: 425 AFSASLGMILPVSTPPNSLAYSTGLIESKDMAKTGLVIGGIGLGIVYLMVFLL 477
           A +AS   + PVS+P N+L    G     D  K G+    I + +  +M+ +L
Sbjct: 555 AMAASAAFMTPVSSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPML 607



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 13/229 (5%)

Query: 58  LLWVLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIFSAFSSPII 117
           L+WVL    + A +I++ A   V +    L           L   L   ++FS FS P +
Sbjct: 5   LIWVLS---LLAVAIVLFATGRVRMDAVALFVIVA----FALSGTLTVPEVFSGFSDPNV 57

Query: 118 ILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLMLITSVFSMFMSNTATTVM 177
           +L    F +     +  +   +   L+K  G+    +++ LML  +    FMS+T     
Sbjct: 58  VLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTG---- 113

Query: 178 MLALLGPIVAS-APKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIALQYLTGENSIDF 236
           ++A+  P+V S A +       L++ +  A    G+ T + TPPN +    L  E    F
Sbjct: 114 VVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGF 173

Query: 237 LSWMMMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGEFQRGWRAML 285
             + +  +  V++ L I + L+ + F     T T + +G  +R +R ++
Sbjct: 174 SFFSVTPIGLVVLVLGILYMLVMR-FMLKGDTQTPQREGWTRRTFRDLI 221



 Score = 45.8 bits (107), Expect = 4e-09
 Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 19/193 (9%)

Query: 291 ALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMGKEELKQINWDV-LWLVAGGIAIGIG 349
           A+ IVL+ T     +    VA+  +  F L+G +   E+     D  + L+A    IG G
Sbjct: 13  AVAIVLFATGR---VRMDAVALFVIVAFALSGTLTVPEVFSGFSDPNVVLIAALFIIGDG 69

Query: 350 LEQTGLAQALAH-SIDYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSM 408
           L +TG+A  +    +     S + +++ L L    +  FMS+T    + +P+  ++   M
Sbjct: 70  LVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTVAGLGAFMSSTGVVAIFIPVVLSVAMRM 129

Query: 409 SSLEQVGGLQALLVVVAFSASL-GMILPVSTPPNSLAYSTGLIESK------DMAKTGLV 461
            +         L++ ++F+  + GM+  V+TPPN +  S  L E         +   GLV
Sbjct: 130 QT-----SPSRLMMPLSFAGLISGMMTLVATPPNLVVNSELLREGYHGFSFFSVTPIGLV 184

Query: 462 IGGIGLGIVYLMV 474
           +  + LGI+Y++V
Sbjct: 185 V--LVLGILYMLV 195