Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' from Rhodanobacter sp000427505 FW510-R12

 Score = 1949 bits (5049), Expect = 0.0
 Identities = 968/1370 (70%), Positives = 1150/1370 (83%), Gaps = 1/1370 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLLN    Q  T +FDAIKI LASP++IRSWS+GEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKDLLNLFNQQRTTPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKR+KHRGV+CEKCG EVT  KVRR+RMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIER+LYFE +VV +PGMT LERGQ+L+E++YL+  EE GDEF A+M
Sbjct: 121  PSRIGLMLDMTLRDIERILYFEAFVVIDPGMTALERGQLLSEDQYLEATEEHGDEFDARM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+  LL S+DLP E  +++EE+ +TNSETK K+LTKR+KL+EAF+ SGNKPEWM+LT
Sbjct: 181  GAEAVFHLLKSLDLPGEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDALLDNGRRGRAITG+NKR LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFI++KL+ RG ATTIKAAKK+VEREE  VWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            RTLMMS+NNILSPA+G+PIIVP+QDVVLGLYYMTRE INAKG GM  +G +EA +AY  +
Sbjct: 481  RTLMMSSNNILSPANGEPIIVPTQDVVLGLYYMTRELINAKGTGMVFSGVSEARRAYDNR 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
              ELHA+VKVR+      E+G  ++ET++++TTVGRA+L +I+P+GLP+ L N +L KK 
Sbjct: 541  AVELHAKVKVRLKLVHIAEDGTRSSETRLVETTVGRALLAEILPEGLPFELANTELTKKN 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS L+N +YR LGLK+TV+FAD++MYTG+ +A  +G+S+GIDDM++P  K T + EAE+E
Sbjct: 601  ISRLINSSYRLLGLKETVVFADKLMYTGYRFATRAGISIGIDDMLIPNEKKTILDEAEKE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQ+Q+QSGLVTAGERYNKV+DIW+ T+++VAKAM++ + +E+V++ +G+   Q+S N
Sbjct: 661  VVEIQQQYQSGLVTAGERYNKVVDIWSRTSEQVAKAMIDGIGTEKVVDAEGKMVSQKSMN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            S+Y+MADSGARGS AQIRQLAGMRGLMARPDGSIIETPI ANF+EGLNVLQYF STHGAR
Sbjct: 721  SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQDVVVT  DCGT +GV M P +EGGDV   L +  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTMDDCGTEDGVTMQPIVEGGDVVEPLRDRVL 840

Query: 841  GRVVSEDILKPGTDE-VLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCY 899
            GRVV ED+  PG D+  ++ R+TLL+E   + ++   V  IKVRS +TC++  G C  CY
Sbjct: 841  GRVVVEDVYAPGDDDRPIVTRDTLLNEALVEKLDKAGVQIIKVRSPITCEAVHGVCKLCY 900

Query: 900  GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVK 959
            GRDLARGHLVN GEAVGV+AAQSIGEPGTQLTMRTFHIGGAAS AAA +++  K  GS+K
Sbjct: 901  GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGSLK 960

Query: 960  LHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVAN 1019
             +N K V +K G LV  SR+ EL++ID  GR +E++K+PYG++++  DG  V  G+TVAN
Sbjct: 961  FNNLKSVQHKQGHLVAVSRSGELSVIDASGRERERYKVPYGAVIAVKDGAPVKPGQTVAN 1020

Query: 1020 WEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIK 1079
            W+ HT PI+TEVAG V+F+D +DGVTV  QTD+LTGL S+ VT+   R A  KD+RP ++
Sbjct: 1021 WDPHTHPIVTEVAGVVRFIDFLDGVTVQSQTDELTGLESAVVTDPKRRGAQAKDLRPIVR 1080

Query: 1080 LVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLP 1139
            L DA G+++ +PGTD+ AQYFLP  AIV++ +GAEV VGD +ARIPQ++   +DITGGLP
Sbjct: 1081 LEDAKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP 1140

Query: 1140 RVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFE 1199
            RVADLFEARKPKEPAILAE SG +SFGK+TKGK+RLII    G+ +EE+IPK RQ+ VFE
Sbjct: 1141 RVADLFEARKPKEPAILAERSGIISFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GE +E+G+ + DG  SPHDILRL G+  + TY+  E+Q+VYRLQGVKINDKHIE I+RQM
Sbjct: 1201 GEHVEKGETVVDGEPSPHDILRLLGVEPLATYLVKEIQDVYRLQGVKINDKHIEAIIRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRK  I   G+S +L GE VE  ++   N + + +G+ PA ++  LLGITKASLATESFI
Sbjct: 1261 LRKVEIVEPGESHYLRGEQVERVRINGENERALAKGERPAEYQSVLLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ 1369
            SAASFQETTRVLTEAAV G RD LRGLKENVIVGRLIPAGTG AYH  R+
Sbjct: 1321 SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRR 1370