Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1418 a.a., DNA-directed RNA polymerase beta from Sphingobium sp. HT1-2

 Score = 1628 bits (4217), Expect = 0.0
 Identities = 840/1389 (60%), Positives = 1049/1389 (75%), Gaps = 21/1389 (1%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            M +L NF     K E FD I+IGLASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCAR
Sbjct: 1    MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKR+K++G++CEKCGVEVT +KVRR+RMGHIELA+PVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAK 179
            PSRIGLL+DM L+ +ERVLYFE Y+VTEPG+T LE+ Q+LTE+E LD  +E+G D F+A 
Sbjct: 121  PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG 180

Query: 180  MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
            +GAEA+K +L  +DL  E + + +EL  T SE K KK+ KRLK+VE+F+ SGN+PEWMIL
Sbjct: 181  IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL 240

Query: 240  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
             V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDIIVRNEKRML
Sbjct: 241  DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QE+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP
Sbjct: 301  QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP 360

Query: 360  YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
             L+LHQCGLPKKMALELFKPFIY++L+ +GL+ T+K AKK VE+E   VWDILDEVIREH
Sbjct: 361  ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH 420

Query: 420  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLE
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480  ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRT 539
            AR LMMSTNNILSPA+G PIIVPSQD+VLG+YY++ E+    GEGM L+   E  +A   
Sbjct: 481  ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLSDMQEVHQALYA 540

Query: 540  KTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKG--LPYSLVNQKLG 597
            K   LH+++  R+ +T   ENG+     K  +TT GR +L + +PK   +P+ +VN+ L 
Sbjct: 541  KAVTLHSKIISRVPQT--DENGQ--QYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLT 596

Query: 598  KKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEA 657
            KK+I +++++ YR  G KDTV+FAD IM  GF +A  +G+S G DDMV+P +K T + E 
Sbjct: 597  KKEIGDVIDQVYRHTGQKDTVLFADAIMSLGFRHAFQAGISFGKDDMVIPDSKVTMVDET 656

Query: 658  EEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQE 717
            +  V + ++Q+Q GL+T  E+YNKVID W+   D+VA AMM+ + ++    + G   +  
Sbjct: 657  KALVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPKTG---RLA 713

Query: 718  SFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTH 777
              NSIYMMA SGARGS AQ++QLAGMRGLMA+P G IIETPI +NFKEGL VL+YF STH
Sbjct: 714  PINSIYMMAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTH 773

Query: 778  GARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTE 837
            GARKGLADTALKTANSGYLTRRLVDV+QD  + E DCGT + + M   ++GG V  +L E
Sbjct: 774  GARKGLADTALKTANSGYLTRRLVDVSQDCTIVEDDCGTEKALEMKAIVQGGSVIASLGE 833

Query: 838  LALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQ 897
              LGR  ++DI+      V+IP  TLLDE     I       +K+RS + C+S  G C +
Sbjct: 834  RILGRTTAQDIVDSKDGTVIIPIGTLLDEAMITQIEAIGTQAVKIRSPLICESRMGVCGK 893

Query: 898  CYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGS 957
            CYGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA+     N ++A ++G+
Sbjct: 894  CYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSN-LEALSDGT 952

Query: 958  VKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETV 1017
            ++L +   +T+K+G+ +  +R  E+ IID  GR +E H+LPYG+ +  ADGDAV  G+  
Sbjct: 953  IELRDMPTITDKNGRRLSLARNGEVAIIDSEGRERETHRLPYGATILFADGDAVKKGDRF 1012

Query: 1018 ANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPA 1077
            A W+  TMP+ITE  G V++VD+ID  T++ QTD+ TG++   V E        +D+RP 
Sbjct: 1013 AEWDPFTMPVITEKPGIVKYVDLIDNKTLTEQTDEATGIAQRVVIEHRGAARTKEDLRPR 1072

Query: 1078 IKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGG 1137
            + L+D N  +         A+Y L   A +++DDGAEV  GD LAR+ +++   +DITGG
Sbjct: 1073 LTLMDDNSGEA--------ARYMLAVGATLSVDDGAEVQAGDVLARVSREAAKTRDITGG 1124

Query: 1138 LPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLN 1196
            LPRVA+LFEARKPK+ AI+A+ SG V F K+ K KR++ I   D G+  E +IPK + ++
Sbjct: 1125 LPRVAELFEARKPKDNAIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVID 1184

Query: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256
            V EG+ ++RGD +  G   PHDIL + GI  +  Y+  E+QEVYRLQGVKINDKHIETIV
Sbjct: 1185 VQEGDYVKRGDNLIGGSPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIV 1244

Query: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316
            RQML+K  I  +GD+  L GE V+  ++   N KL + G  PA  +  LLGITKASL T 
Sbjct: 1245 RQMLQKVEIIESGDTTLLVGEQVDREEMDEINSKL-QPGFAPAAGKPVLLGITKASLQTR 1303

Query: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ 1376
            SFISAASFQETTRVLTEAAV GK+D L GLKENVIVGRLIPAGTG   ++ R A  +++ 
Sbjct: 1304 SFISAASFQETTRVLTEAAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSRDA 1363

Query: 1377 QGPSAEQAT 1385
               +A +A+
Sbjct: 1364 AMRAALRAS 1372