Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1438 a.a., DNA-directed RNA polymerase subunit beta' from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 1306 bits (3380), Expect = 0.0
 Identities = 696/1438 (48%), Positives = 952/1438 (66%), Gaps = 109/1438 (7%)

Query: 7    FLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66
            F K +  T++F  + I LASP+ I   S GEV KPETINYRT+KPE  GLFC RIFGPVK
Sbjct: 3    FAKNKKLTQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGPVK 62

Query: 67   DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGL 126
            D+EC CGKYKR++++G+IC++CGVEVT+ KVRR+RMGHIEL  PVAHIW+ KSLP++IG 
Sbjct: 63   DWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKIGY 122

Query: 127  LMDMPLRDIERVLYFEMYVVTEPGMTDLERG----QMLTEEEYLDRLEEWGDE------- 175
            L+ +P + +++++Y+E YVV +PG+   E G      LTE+EYLD +++   E       
Sbjct: 123  LLGLPTKKLDQIIYYERYVVIQPGIL-AEDGVNTLDFLTEDEYLDMVDKLPRENQMLDNN 181

Query: 176  ----FTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAF---- 227
                F AKMGAEA++ LL  ++L   + ++R       S+ ++ +  KRL++VEAF    
Sbjct: 182  DPNKFIAKMGAEALQMLLERINLDDLSYELRHAAAHETSQQRKAEALKRLRVVEAFRDAT 241

Query: 228  VASGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAA 287
                N+PEWM++ ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+E+ A
Sbjct: 242  TRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKA 301

Query: 288  PDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347
            P++I+RNEKRMLQE+VD+L DN R+  A+     R LKSL+DM+KGKQGRFRQNLLGKRV
Sbjct: 302  PEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKRV 361

Query: 348  DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAV 407
            DYSGRSVI VGP L+LH+CGLPK MA ELFKPFI  KL  RG+  T+K+AKK+V+R++ V
Sbjct: 362  DYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDPV 421

Query: 408  VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467
            VWDIL+ V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQMA
Sbjct: 422  VWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMA 481

Query: 468  VHVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTR-----EKINAKG 522
            VHVPL   A LEA  LM++++NIL+PA+G PI VPSQD+VLGLYY+++     E    +G
Sbjct: 482  VHVPLGPAAVLEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVSKGKRSTENEKIEG 541

Query: 523  EGMYLTGPAEAEKAYRTKTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQI 582
            EGM      E   A   K    HA +KVR    +K+E G+L  ETK+I+T  GR +  Q 
Sbjct: 542  EGMSFYSAEEVVIATNEKRISKHAYIKVR--TKVKNEQGEL--ETKLIETVAGRVIFNQF 597

Query: 583  VPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGID 642
            VP+ + Y  +++ L KK++  +++  +++ G+  T  F D I   GF  A   G+S+G+ 
Sbjct: 598  VPEEVGY--IDELLTKKKLQQIISRVFKETGMARTAQFLDDIKTLGFQSAYKGGLSMGLG 655

Query: 643  DMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLS 702
            D+ +PA K   + +A+++V  + + +  GL+T  ERYN+VIDIW   N+++ + +M  L 
Sbjct: 656  DINIPAEKEVLVEQAKKDVDAVWQNYSMGLITDNERYNQVIDIWTRINNQITETLMRRLE 715

Query: 703  SEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPD-------GSII 755
            +E            + FNSI+MM  SGARGS  QIRQL GMRGLMA+P        G II
Sbjct: 716  NE-----------DQGFNSIFMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEII 764

Query: 756  ETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCG 815
            E PI +NFKEGL+V++YFISTHGARKGLADTALKTA++GYLTRRLVDV+QDV+V E DCG
Sbjct: 765  ENPILSNFKEGLDVIEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEEDCG 824

Query: 816  TLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDN 875
            TL G+ ++   +  D+  +L+E  LGRV   D+  P ++++++   T + E+  + I + 
Sbjct: 825  TLRGLEVSALKDNEDIVESLSERILGRVAVHDVFDPISNDLIVASGTEITEEIARAIENT 884

Query: 876  SVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTF 935
            S++ +++RSV+TC+S  G C +CYGR+LA G +V +GEAVGVIAAQSIGEPGTQLT+RTF
Sbjct: 885  SIESVEIRSVLTCESKRGICGKCYGRNLATGFMVQKGEAVGVIAAQSIGEPGTQLTLRTF 944

Query: 936  HIGGAASTAAAENSIQAKNNGSVKLHNAKFV--TNKDGK--LVITSRASELTIID-EFGR 990
            H+GG AS  A E +I AK  G ++  + + +   N +G+   V+  R+ E+ ++D   G+
Sbjct: 945  HVGGTASNIAVEATILAKFGGKIEFEDVRSLDTVNNEGEPVKVVMGRSGEVKVVDPNTGK 1004

Query: 991  TKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQT 1050
                + +PYGS L   +G  V  G  + NW+ +   I++E  G + +  +I+GVT   ++
Sbjct: 1005 LLISNHVPYGSFLHVNEGQVVEKGAILCNWDPYNAVILSEFDGEISYESIIEGVTYREES 1064

Query: 1051 DDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLD 1110
            D+ TG     + +        K   PAI +   NG+         P  Y +P  A + ++
Sbjct: 1065 DEQTGYREKVIID-----TKDKTQNPAIVVNPKNGE---------PKGYNIPVGAHLTVE 1110

Query: 1111 DGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETK 1170
            +G ++  G  L +IP+  G  +DITGGLPRV +LFEAR P  PA+++E  G V++G   +
Sbjct: 1111 NGEKIKAGQILVKIPRAIGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGSVKR 1170

Query: 1171 GKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTT 1230
            G R + I    G   + M+P  + + V + + I  G  ++DG  +P DIL ++G  AV  
Sbjct: 1171 GNREIFIESKDGVKKKYMVPLSKHILVQDNDFIRAGMPLSDGAITPTDILNIQGPGAVQE 1230

Query: 1231 YIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPGETV----------- 1279
            Y+ NE+QEVYRLQGVKINDKHIE +VRQM++K  +  AGD+ FL  +TV           
Sbjct: 1231 YLVNEIQEVYRLQGVKINDKHIEVVVRQMMQKVVVVDAGDTSFLENQTVDKISFMEENDH 1290

Query: 1280 -----------------------------EYSQVKIANRKLVE-EGKEPARFERELLGIT 1309
                                         E S +K  + +LV     +PA     L GIT
Sbjct: 1291 IIDMKVVEDAGDSTNLKPGQIVTPRRLRDENSSLKRRDLRLVTVRDAQPAVSRPTLQGIT 1350

Query: 1310 KASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQD 1367
            +ASL T+SFISAASFQETT+VL+EAA+ GK D+L GLKENVIVG LIPAGTG   +Q+
Sbjct: 1351 QASLGTQSFISAASFQETTKVLSEAAIKGKADELLGLKENVIVGHLIPAGTGLREYQN 1408