Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1406 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1789 bits (4634), Expect = 0.0
 Identities = 904/1394 (64%), Positives = 1108/1394 (79%), Gaps = 7/1394 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MK LL+  K     E FDAI+IGLASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHI+LA+P AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSR+GL++DM LRDIERVLYFE YV+ +PGMT L++  +++E++Y  + +E+GDEF AKM
Sbjct: 121  PSRLGLILDMTLRDIERVLYFEAYVIVDPGMTPLKKFAIMSEDDYDAKRKEFGDEFIAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAE IK+LL ++DL  E E++R +L  T SE K KK  KRLK++EAF  SG KPEWM+L 
Sbjct: 181  GAEGIKELLQAIDLDIEIEKLRNDL--TGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLD 238

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN+RL+RLLEL AP+II RNEKRMLQ
Sbjct: 239  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQ 298

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VD+LLDNGRRG+A+TG+NKR LKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 299  EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT 358

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPK MALELFKPFI+S+LE  G+ATTIKAAKK VE    VVWDIL+EVI+EHP
Sbjct: 359  LKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHP 418

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEP+LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL++EAQLEA
Sbjct: 419  VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEA 478

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            RTLM+++NNIL PA+G+P IVPSQDVVLGLYY TRE+INAKGEGM     AE ++A    
Sbjct: 479  RTLMLASNNILFPANGEPSIVPSQDVVLGLYYATRERINAKGEGMLFADLAELQRALDNG 538

Query: 541  TAELHARVKVRITE-TIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKK 599
              E+ A++ VR+T+  +   +G+    T ++DTTVGRA+L +I+PKGLP+ ++N+ L KK
Sbjct: 539  VVEITAKIGVRLTQHALDKASGEFVASTSLVDTTVGRALLSEILPKGLPFDVLNKALKKK 598

Query: 600  QISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEE 659
            +IS L+N ++RK GLK+TV+FAD+++  GF  A  +G+S+ +DDM+VP  K   I  AE 
Sbjct: 599  EISRLINTSFRKCGLKETVVFADKLLQNGFRLATRAGISIAVDDMLVPKEKPAIIDRAEN 658

Query: 660  EVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESF 719
            EV+EI +Q+ SGLVTAGERYNKV+DIW    D ++K MM  L+ ++V +  G++  QESF
Sbjct: 659  EVKEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLAKQKVTDSSGKEVDQESF 718

Query: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGA 779
            NSIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGA
Sbjct: 719  NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 778

Query: 780  RKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELA 839
            RKGLADTALKTANSGYLTRRLVDV QD+VV   DCGT  G +M   +EGG+V  +L +  
Sbjct: 779  RKGLADTALKTANSGYLTRRLVDVTQDLVVNSQDCGTSNGTLMRAIVEGGEVIESLRDRV 838

Query: 840  LGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCY 899
            LGR  +E+++ P T EVL+P   LL+E    V+   +VD++KVR+ +TC++ FG CA+CY
Sbjct: 839  LGRTTAEEVIHPETREVLVPAGELLNEDLLDVLEAAAVDEVKVRTALTCETRFGICAKCY 898

Query: 900  GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVK 959
            GRDL RG LVN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS AA  +S++AK++G + 
Sbjct: 899  GRDLGRGGLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGVIG 958

Query: 960  LH-NAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
             +   ++VTN  G+LV+ +R+ E+ I DE GR +E+HK+PYG++LS      + AG  +A
Sbjct: 959  FNATMRYVTNTKGELVVIARSGEIVIHDEHGRERERHKVPYGAILSVKADQTIKAGAILA 1018

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
            NW+  T PIITE AG+V+F ++ +G+TV++Q DD+TGLS+  V +   R AA K +RP +
Sbjct: 1019 NWDPLTRPIITEFAGQVKFENVEEGLTVAKQVDDVTGLSTLVVIDPKRRGAA-KVVRPQV 1077

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
            KL+D  G +V IPGTD          +++ + DG +V  G+ LARIP +    +DITGGL
Sbjct: 1078 KLIDGTGNEVKIPGTDHSVTIGFQIGSLIQVRDGQDVGPGEVLARIPVEGQKTRDITGGL 1137

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVF 1198
            PRVA+LFEAR PK+  +LAE +GTVSFGKETKGK RL IT   G  ++E+IPK + + V 
Sbjct: 1138 PRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKVRLQITDPDGKVWDELIPKEKNILVH 1197

Query: 1199 EGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQ 1258
            EG+ + +G+ I DGP  P DILRL GI  ++ YI +EVQ+VYRLQGVKINDKHIE IVRQ
Sbjct: 1198 EGQVVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQ 1257

Query: 1259 MLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESF 1318
            MLR+  +   GDS ++ GE VE S++   N  L  +GK PA +   LLGITKASL+T+SF
Sbjct: 1258 MLRRVVVEAVGDSSYIAGEQVERSEILNTNDALRADGKIPATYSNVLLGITKASLSTDSF 1317

Query: 1319 ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRA--QEQ 1376
            ISAASFQETTRVLTEAA+ GKRD+LRGLKENVIVGRLIPAGTG AYH+ R+ K     E+
Sbjct: 1318 ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEE 1377

Query: 1377 QGPSAEQATDNLAA 1390
            +   AE    +LAA
Sbjct: 1378 RRAIAEADAISLAA 1391