Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1496 a.a., DNA-directed RNA polymerase subunit beta' from Magnetospirillum magneticum AMB-1

 Score =  840 bits (2169), Expect = 0.0
 Identities = 409/537 (76%), Positives = 472/537 (87%), Gaps = 1/537 (0%)

Query: 1   MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
           M +L+        T+ FD I+I +ASP+ IRSWS+GE+KKPETINYRTFKPERDGLFCAR
Sbjct: 1   MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61  IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
           IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT  KVRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61  IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121 PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAK 179
           PSRIGLL DM L+D+ER+LYFE YVV EPG+T L+  ++LTEE+Y+  ++E+G D FTAK
Sbjct: 121 PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK 180

Query: 180 MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
           +GAEAI+D+L  +DL  E  Q++ +L  T SE KRKKL KR+KLVEAF+ SG++PEWMIL
Sbjct: 181 IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL 240

Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP+IIVRNEKRML
Sbjct: 241 EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML 300

Query: 300 QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
           QE+VDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301 QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360 YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
            L+LHQCGLPKKMALELFKPF+YSKLE  G+ATTIKAAK+MVE+E   VWDIL+EVIREH
Sbjct: 361 ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH 420

Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
           PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE
Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480 ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKA 536
           AR LMMSTNNILSPA+G PIIVPSQD+VLG+YY+T E+    G+ + +    E + A
Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGA 537



 Score =  839 bits (2167), Expect = 0.0
 Identities = 443/851 (52%), Positives = 594/851 (69%), Gaps = 19/851 (2%)

Query: 531  AEAEKAYRTKTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKG--LP 588
            AE E+A   KT  LH +++ R  +T+  E    T  T+++DTT GR ML  I+PK   +P
Sbjct: 636  AEIEEALTEKTITLHTKIRARF-DTVDSEG---TPVTQIVDTTPGRMMLSVILPKNKNVP 691

Query: 589  YSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPA 648
            +SL+N+ L KK+I N+++  YR  G K+TVIFAD++M  G++ A  +G+S G DD+V+P 
Sbjct: 692  FSLINRLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDDLVIPP 751

Query: 649  AKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVIN 708
             K T + E EE+ +E ++Q+Q GL+T GE+YNKV+D W+   D VA AMM+ +SS     
Sbjct: 752  EKETLVGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISSLV--- 808

Query: 709  RQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLN 768
              G+Q      NSIYMMA SGARGSAAQ++QLAGMRGLMA+P G IIETPI +NFKEGL 
Sbjct: 809  -PGKQ-----INSIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLT 862

Query: 769  VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEG 828
            VL+YF STHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E DCGT  G+ ++P IEG
Sbjct: 863  VLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVSPVIEG 922

Query: 829  GDVKVALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTC 888
            G+V  +L E  LGR  + DI+ P T EV++    ++ E   ++I+   ++ + +RSV+TC
Sbjct: 923  GEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIRSVLTC 982

Query: 889  DSDFGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAEN 948
            DS+ G C  CYGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA   A ++
Sbjct: 983  DSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQS 1042

Query: 949  SIQAKNNGSVKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADG 1008
            SI+A  +G+V++ N   V N  G  ++ SR  E+ ++D   R + +H++PYG+ L   + 
Sbjct: 1043 SIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKLLVDEA 1102

Query: 1009 DAVAAGETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARP 1068
              V  G  +A W+ +T+PIITE AG   +VD+ +G+++    D+ TG++S  V +   +P
Sbjct: 1103 QKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVDWKQQP 1162

Query: 1069 AAGKDMRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKS 1128
              G D+RP + L D  G+++L+    + A+YF+   AI+++++  +VN GD LARIP++S
Sbjct: 1163 -RGADLRPRVTLRDEKGEELLL-ANGLEARYFMSVDAILSVENNTKVNAGDVLARIPRES 1220

Query: 1129 GGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEM 1188
               +DITGGLPRVA+LFEARKPK+ AI+++  G V FGK+ K KRR+++  + GD  E +
Sbjct: 1221 SKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEEGDAIEYL 1280

Query: 1189 IPKHRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKIN 1248
            IPK + ++V EG+ + RGD + DG   PHDIL++ G+ A+  Y+ NE+QEVYRLQGVKIN
Sbjct: 1281 IPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRLQGVKIN 1340

Query: 1249 DKHIETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGI 1308
            DKHIE IVRQML+K  IT  GD+  L GE V+  +  I N K + E   PA     L GI
Sbjct: 1341 DKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGTPVLQGI 1400

Query: 1309 TKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDR 1368
            TKASL T SFISAASFQETTRVLTEAAVSGK D L+GLKENVIVGRLIPAGTG   ++ R
Sbjct: 1401 TKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTGAVMNRLR 1460

Query: 1369 --QAKRAQEQQ 1377
               AKR ++ Q
Sbjct: 1461 AIAAKRDKDMQ 1471