Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1406 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Kangiella aquimarina DSM 16071

 Score = 2075 bits (5376), Expect = 0.0
 Identities = 1042/1404 (74%), Positives = 1201/1404 (85%), Gaps = 9/1404 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLLNF+K Q+++EEFDAI+IGLASPD IRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLNFIKQQNQSEEFDAIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRG+ICEKCGVEVT TKVRR+RMGHI+LA PVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIG+L+DM LRDIER+LYFE +VVTEPGMT LE GQ+L+EE YLD LEE+GD+F AKM
Sbjct: 121  PSRIGMLLDMTLRDIERILYFEAFVVTEPGMTTLEAGQLLSEEGYLDALEEFGDDFEAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREE-LDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
            GAEAI  LL  +DL  EA+++REE + +TNSETK KKL+KRLKL+EAF+ SGN P+WMI+
Sbjct: 181  GAEAISALLDLIDLKEEAQRIREEEIPSTNSETKLKKLSKRLKLLEAFLDSGNDPQWMIM 240

Query: 240  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
            TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL+RLL+L APDIIVRNEKRML
Sbjct: 241  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
             L+LHQCGLPKKMALELFKPFIYSKLE RGLATTIKAAKKMVEREE VVWDIL+EVIREH
Sbjct: 361  TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPVVWDILEEVIREH 420

Query: 420  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC AYNADFDGDQMAVHVPLT+EAQLE
Sbjct: 421  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAYNADFDGDQMAVHVPLTIEAQLE 480

Query: 480  ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRT 539
            AR LMMSTNNILSPA+G+PIIVP+QDVVLGLYY+TR+++NAKGEGM  +   E ++AY  
Sbjct: 481  ARALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRDRVNAKGEGMIFSDADEVQRAYAN 540

Query: 540  KTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKK 599
               +LHA+VKVR+      E G  T   ++ +TTVGR++LW IVP G+ + LVN+ + KK
Sbjct: 541  GIVDLHAKVKVRLPMVDIDEEGNKTARIELAETTVGRSLLWGIVPDGISFDLVNKPMTKK 600

Query: 600  QISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEE 659
             IS L+N  YR+ GLK TVIFADQ+MYTGF YA  SG SVGI+DM +P AK   I  AE+
Sbjct: 601  AISKLVNTCYRECGLKATVIFADQLMYTGFGYATRSGASVGIEDMSIPEAKAEIIEAAEK 660

Query: 660  EVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESF 719
            EV EIQEQF SGLVT GERYNKV+DIW+ TN++VAKAMM+ + +E+V++++G   +Q SF
Sbjct: 661  EVAEIQEQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDFIGTEEVVDKEGNTVRQPSF 720

Query: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGA 779
            NSI+MMADSGARGSAAQIRQLAGMRGLMA+PDGSIIE PITANF+EGL+V QYFISTHGA
Sbjct: 721  NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTHGA 780

Query: 780  RKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELA 839
            RKGLADTALKTANSGYLTRRLVDVAQD+V+TEHDCGT EGV M+P IEGGDV   L+E  
Sbjct: 781  RKGLADTALKTANSGYLTRRLVDVAQDMVITEHDCGTEEGVYMSPLIEGGDVVEPLSERV 840

Query: 840  LGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCY 899
            LGRVV+E +  PGTD++L    TLLDEKW + +  NSVDQ+KVRSV+TC +  G CA CY
Sbjct: 841  LGRVVAEHVYVPGTDDILAEAGTLLDEKWVETLEQNSVDQVKVRSVITCQTRNGVCAACY 900

Query: 900  GRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVK 959
            GRDLARGH++NQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS A+A+N++Q KN+G ++
Sbjct: 901  GRDLARGHIINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGEIR 960

Query: 960  LHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVAN 1019
            L NAK V  +DGKLVI SR+SEL +IDE+GR +E++K+PYG++LS  +G+    G+ VAN
Sbjct: 961  LKNAKTVERQDGKLVIVSRSSELNVIDEYGRERERYKVPYGAVLSAKEGEQAKGGDIVAN 1020

Query: 1020 WEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAA-GKDMRPAI 1078
            W+ HT PII E+ G++QFVDMI+GV + RQTD+LTGLSS  +TE   R  +   D++PAI
Sbjct: 1021 WDPHTHPIIAELDGKIQFVDMIEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKPAI 1080

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
            KL+D  GKD+ IPGT+MPA YFLP  AIV+L+DGAEVN+GD +ARIPQ+S   KDITGGL
Sbjct: 1081 KLIDKKGKDLYIPGTEMPAVYFLPTNAIVSLEDGAEVNIGDAIARIPQESSKTKDITGGL 1140

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLNV 1197
            PRVADLFEARKPKEPAILAE SGTVSFGKETKGKRRL+IT +D GDTYEE+IPK RQLNV
Sbjct: 1141 PRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPQDGGDTYEELIPKWRQLNV 1200

Query: 1198 FEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVR 1257
            FEGE++E+G+V++DG ++PHDILRL+GI  +  YI NEVQEVYRLQGV INDKHIE I+R
Sbjct: 1201 FEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGINDKHIEVIIR 1260

Query: 1258 QMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATES 1317
            QMLRKC +T  GDS FL G+ +E  +V   N KLVE GK+P  FER L+GITKASLATES
Sbjct: 1261 QMLRKCIVTDPGDSLFLKGDQMEVVRVLEENDKLVEAGKDPVHFERVLMGITKASLATES 1320

Query: 1318 FISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQ--- 1374
            FISAASFQETTRVLTEAAV+GK DDLRGLKENVIVGRLIPAGTG  YH +R+ KRA+   
Sbjct: 1321 FISAASFQETTRVLTEAAVNGKTDDLRGLKENVIVGRLIPAGTGLTYHAERRRKRAESMV 1380

Query: 1375 EQQGPSA---EQATDNLAALLNAG 1395
            E  G SA   EQA  +  + +N G
Sbjct: 1381 EDLGLSADEVEQALSDELSSINEG 1404