Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Erwinia tracheiphila SCR3

 Score = 2266 bits (5871), Expect = 0.0
 Identities = 1143/1406 (81%), Positives = 1259/1406 (89%), Gaps = 5/1406 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLKAQ KTEEFDAIKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGLL+DMPLRDIERVLYFE YVV E GMT+LE+ Q+LTEE+YLD LEE+GDEF AKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI+ LL +MDL  E EQ+REEL+ TNSETKRKKLTKR+KL+EAFV SGNKPEWMILT
Sbjct: 181  GAEAIQSLLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYMTR+ +NAKGEGM LTGP EAE+ YR  
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             A LHARVKVRI E  K++ G+ T  T ++DTT+GRA+LW IVPKGLP+S+VNQ LGKK 
Sbjct: 541  LASLHARVKVRIIEHEKNDRGEWTAITSLVDTTIGRAILWMIVPKGLPFSIVNQALGKKA 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS +LN  YR LGLK TVIFADQ MYTGFAYAA SG SVGIDDMV+P  K   I EAE E
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIITEAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWA+ N+RVAKAMMENLS+E VINR GE+E+Q SFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGEEERQVSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SI+MMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVTE DCGT EG++MTP IE GDVK  L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEDGDVKEPLRERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRV +ED+LKPGT ++L+PRNTLL E  C ++ ++SVD +KVRSVV+C++DFG CA CYG
Sbjct: 841  GRVTAEDVLKPGTADILLPRNTLLHEHQCDLLEEHSVDSLKVRSVVSCETDFGVCAHCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH++N+GE++GVIAAQSIGEPGTQLTMRTFHIGGAAS AAAE+SIQ KN G++KL
Sbjct: 901  RDLARGHIINKGESIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
             NAK VTN  GKL+ITSR  EL +IDEFGRTKE +K+PYG+ ++K DG+ VAAGETVANW
Sbjct: 961  INAKSVTNSAGKLIITSRNVELKMIDEFGRTKESYKVPYGAAMAKGDGEQVAAGETVANW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HTMP+ITEV+G V+F DMIDG T++RQTDDLTGLSS  + ++A R A+GKD+RPA+K+
Sbjct: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDDLTGLSSLVILDSAERTASGKDLRPALKI 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            VDANG DVLIPGTDMPAQYFLPGKAIV L+DG +++ GDTLAR+PQ+SGG KDITGGLPR
Sbjct: 1081 VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIKISSGDTLARVPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITR-DSGDTYEEMIPKHRQLNVFE 1199
            VADLFEAR+PKEPAILAE SG +SFGKETKGKRRL+IT  D  D YEEMIPK RQLNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GER+ERGDV++DGPESPHDILRLRG+HAVT YI NEVQEVYRLQGVKINDKHIE IVRQM
Sbjct: 1201 GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRK TI  AG S+FL GE VE S+VKI+NR+L   GK  A + R+LLGITKASLATESFI
Sbjct: 1261 LRKATIENAGSSDFLDGEQVEVSRVKISNRELEANGKIAATYMRDLLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ--- 1376
            SAASFQETTRVLTEAAV+GKRD+LRGLKENVIVGRLIPAGTG+AYHQDR  ++A  +   
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGEVPV 1380

Query: 1377 -QGPSAEQATDNLAALLNAGFSSDDE 1401
                +A++A+ +LA LLNAG   +D+
Sbjct: 1381 VPQVTADEASASLAELLNAGLGGNDD 1406