Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Dickeya dadantii 3937

 Score = 2291 bits (5938), Expect = 0.0
 Identities = 1164/1408 (82%), Positives = 1265/1408 (89%), Gaps = 8/1408 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLKAQ KTEEFDAIKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGLL+DMPLRDIERVLYFE YVV E GMT+LER Q+LTEE+YLD LEE+GDEF AKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI+ LL SMDL  E EQ+REEL+ TNSETKRKKLTKR+KL+EAFV SGNKPEWMILT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYMTR+ +NAKGEGM LTGP EAE+ YR  
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             A LHARVKVRITE  K+  G+ T +  +IDTTVGRA+LW IVPKGLPYS+VNQ LGKK 
Sbjct: 541  LASLHARVKVRITEHQKNAQGEWTQKISLIDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS +LN  YR LGLK TVIFADQIMYTGFAYAA SG SVGIDDMV+PA K   I+EAE E
Sbjct: 601  ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKVEIISEAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWA+ N+RVAKAMMENLS+E VINR GE+EKQ SFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRNGEEEKQVSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SI+MMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVTE DCGT EG++MTP IEGGDVK  L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRV +ED+LKPGT ++L+PRNTLL+EKWC ++ +NSVD +KVRSVV C++DFG CA+CYG
Sbjct: 841  GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEENSVDAVKVRSVVGCETDFGVCAKCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH++N+GEA+GVIAAQSIGEPGTQLTMRTFHIGGAAS AAAE+SIQ KN GS+KL
Sbjct: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
             NAKFV N  GKLVITSR +EL +IDEFGRTKE +K+PYG+++ K DG  V  G+TVANW
Sbjct: 961  TNAKFVKNVAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGSEVNGGDTVANW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HTMP+ITEV G ++F DMIDG T++RQTD+LTGLSS  V ++A R   GKD+RPA+K+
Sbjct: 1021 DPHTMPVITEVGGSIRFTDMIDGQTITRQTDELTGLSSIVVLDSAERTGGGKDLRPALKI 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            VDANG DVLIPGTDMPAQYFLPGKAIV L+DG+++  GDTLARIPQ+SGG KDITGGLPR
Sbjct: 1081 VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGSQIGAGDTLARIPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITR-DSGDTYEEMIPKHRQLNVFE 1199
            VADLFEAR+PKEPAILAE SG VSFGKETKGKRRL+IT  D  + YEEMIPK RQLNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGVVSFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GER+ERGDVI+DGPESPHDILRLRG+HAVT YI NEVQEVYRLQGVKINDKHIE IVRQM
Sbjct: 1201 GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRK TI   G SEFL GE VE S++KIANR+L  +GK  A + R+LLGITKASLATESFI
Sbjct: 1261 LRKGTIVNPGSSEFLEGEQVEMSRIKIANRQLETDGKITATYSRDLLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGP 1379
            SAASFQETTRVLTEAAV+GKRD+LRGLKENVIVGRLIPAGTG+AYHQDR  +R Q  + P
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM-RRRQAGEVP 1379

Query: 1380 -----SAEQATDNLAALLNAGF-SSDDE 1401
                 SA++A+ NLA LLNAGF SSDDE
Sbjct: 1380 AVAQVSADEASANLAELLNAGFGSSDDE 1407