Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1437 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 1314 bits (3400), Expect = 0.0
 Identities = 708/1432 (49%), Positives = 951/1432 (66%), Gaps = 109/1432 (7%)

Query: 7    FLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66
            F K +    +F  + I LASP+ I   S GEV +PETINYRT+KPE  GLFC RIFGPVK
Sbjct: 3    FRKNKKLNNDFSRVTISLASPESILDSSHGEVTQPETINYRTYKPEMGGLFCERIFGPVK 62

Query: 67   DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGL 126
            D+EC CGKYKR++++G+IC++CGVEVT+ KVRR+RMGHIEL  PVAHIW+ KSLP++IG 
Sbjct: 63   DWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKIGY 122

Query: 127  LMDMPLRDIERVLYFEMYVVTEPGMT---DLERGQMLTEEEYLDRLEEWGDE-------- 175
            L+ +P + +++++Y+E Y V  PG+     L+    LTE+EYLD +++   E        
Sbjct: 123  LLGLPTKKLDQIVYYERYAVINPGIKAEDGLQYLDFLTEDEYLDIMDKLPKENQMLDDDD 182

Query: 176  ---FTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAF----V 228
               F AKMGAEAI+ LL+ +DL   +  +R +  T  S+ ++ +  KRLK+VEAF     
Sbjct: 183  PNKFIAKMGAEAIEMLLSRLDLDDLSYSLRHQAATDTSQQRKAEALKRLKVVEAFRDART 242

Query: 229  ASGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAP 288
               N+PEWM++ ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ AP
Sbjct: 243  RIENRPEWMVVRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAP 302

Query: 289  DIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348
            ++I+RNEKRMLQE+VD+L DN R+  A+     R LKSL+DM+KGKQGRFRQNLLGKRVD
Sbjct: 303  EVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKRVD 362

Query: 349  YSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVV 408
            YSGRSVI VGP L+LH+CGLPK MA ELFKPFI  KL  RG+  T+K+AKK+V+R++ VV
Sbjct: 363  YSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDPVV 422

Query: 409  WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468
            WDIL+ V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQMAV
Sbjct: 423  WDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAV 482

Query: 469  HVPLTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTR-----EKINAKGE 523
            HVPL  EA LEA TLM+S++NIL+PA+G PI VPSQD+VLGLYY+T+     E+    GE
Sbjct: 483  HVPLGHEAILEASTLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRRSTEEEPVPGE 542

Query: 524  GMYLTGPAEAEKAYRTKTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIV 583
            GM   G  +   A   K    HA +K ++   ++ ENG+L    K+++T  GR +  Q V
Sbjct: 543  GMTFYGEEDVIIALNEKVISQHAYIKCKVK--VRDENGELVD--KIVETVAGRLIFNQFV 598

Query: 584  PKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDD 643
            P+ + Y  VN+ L KK++  ++ E  +  G+  +  F D I + GF  A   G+S+G++D
Sbjct: 599  PEEVGY--VNELLTKKKLQQIIAEVVKICGIARSAQFLDDIKHLGFQMAYAGGLSMGLND 656

Query: 644  MVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSS 703
            +++P+ K   I +A++EV ++   +  GL+T  ERYN+VIDIW  TN  +   +M+ +  
Sbjct: 657  VIIPSDKDPLITKAKDEVDQVWNNYLMGLITDNERYNQVIDIWTRTNSNLTNILMKQM-- 714

Query: 704  EQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPD-------GSIIE 756
                     +E ++ FN+IYMM  SGARGS  QIRQL GMRGLMA+P        G IIE
Sbjct: 715  ---------EEDKQGFNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIE 765

Query: 757  TPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGT 816
             PI +NFKEGL+VL+YFISTHGARKGLADTALKTA++GYLTRRLVDVAQDV+V+E DCGT
Sbjct: 766  NPILSNFKEGLDVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVSEEDCGT 825

Query: 817  LEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNS 876
            L G+V+    +  ++   L+E  +GRV   D++ P TDEV+I     + ++  + +++++
Sbjct: 826  LRGLVVQALKDNDEIVEPLSERIVGRVSVHDVIDPITDEVIIQSGEEITDELARKVDESA 885

Query: 877  VDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFH 936
            V+++++RSV+TC+S  G C +CYGR+L  G +V  GE+VGVIAAQSIGEPGTQLT+RTFH
Sbjct: 886  VEEVEIRSVLTCESRRGVCTKCYGRNLTTGSVVQNGESVGVIAAQSIGEPGTQLTLRTFH 945

Query: 937  IGGAASTAAAENSIQAKNNGSVKLHNA-KFV--TNKDGK--LVITSRASELTIID-EFGR 990
            +GG AS  + E SI AK  G V+     +F+  TNKDG    V+  R+ E+ I D + G+
Sbjct: 946  VGGTASNISVEASINAKFEGVVEFEEEFRFINTTNKDGDPVAVVMGRSGEIKINDAKSGK 1005

Query: 991  TKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQT 1050
            T   + +PYG++L+  DG  +  G+++  W+ +   I++E  G V F  +I+GVT     
Sbjct: 1006 TLASNHVPYGAILNVKDGQKIGKGDSLCTWDPYNAVILSEFDGEVSFESIIEGVTFKEVA 1065

Query: 1051 DDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLD 1110
            DD TG     + +        K   PA          V++   D    Y +P  A + ++
Sbjct: 1066 DDQTGYKEKVIIDTK-----DKTKNPA----------VVVNYGDETKSYNIPVGAHLAVE 1110

Query: 1111 DGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETK 1170
            +G +V  G  L +IP+  G  +DITGGLPRV +LFEAR P  PA+++E  G V++G   +
Sbjct: 1111 EGDKVKAGQILVKIPRSVGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGGIKR 1170

Query: 1171 GKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTT 1230
            G R + I    G     M+   + + V E + I  G+ ++DG  +P+DIL ++G  AV  
Sbjct: 1171 GNREIFIESKDGVKKRYMVSLSKHILVQENDFIRAGEPLSDGAITPNDILSIKGPTAVQE 1230

Query: 1231 YIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPGETV----------- 1279
            Y+ NE+QEVYRLQGVKINDKHIE IV QM++K  I  AGD+ FL G+ V           
Sbjct: 1231 YLVNEIQEVYRLQGVKINDKHIEVIVSQMMQKVEILDAGDTGFLQGQIVDKWAFREENDN 1290

Query: 1280 -----------------------------EYSQVKIANRKLVE-EGKEPARFERELLGIT 1309
                                         E S +K  + KLV+    E A  +  L GIT
Sbjct: 1291 ILDKKVVMDAGDSSTLKAGMIITSRRLRDENSSLKRKDLKLVQVRDAETAVSKPTLQGIT 1350

Query: 1310 KASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
             ASL TESFISAASFQETT+VL+EAA+ GKRD+L GLKENVIVG LIPAGTG
Sbjct: 1351 AASLGTESFISAASFQETTKVLSEAAIRGKRDELLGLKENVIVGHLIPAGTG 1402