Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1398 a.a., DNA-directed RNA polymerase subunit beta' from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 1634 bits (4232), Expect = 0.0
 Identities = 845/1410 (59%), Positives = 1060/1410 (75%), Gaps = 26/1410 (1%)

Query: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61
            +++LN       T  FD IKI LASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCARI
Sbjct: 3    QEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRR+RMGHI+LA+PVAHIWFLKSLP
Sbjct: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKSLP 122

Query: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDE-FTAKM 180
            SRI L++DM L+D+ERVLYFE Y+VTEPG+T L++ Q+LTE+E+    EE+GD+ FTA++
Sbjct: 123  SRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEFGDDGFTAEI 182

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+++LL  +DL AEAE+ R EL    SE K KK +KRLKL+EAF+ SGNKPEWMILT
Sbjct: 183  GAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMILT 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQ
Sbjct: 243  IVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LH+CGLPKKMALELFKPFIY++L+ +GL+ T+K +K+MVERE+  VWDILDEVIREHP
Sbjct: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIREHP 422

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAI+LHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G PIIVPSQD+VLGLYY++  K    GEG       E + A   K
Sbjct: 483  RVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALDAK 542

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPK--GLPYSLVNQKLGK 598
               LH R+K R TE    ++ +    TK+IDTT GR  L  ++P+   + Y L+ + L K
Sbjct: 543  VVTLHTRIKARWTE----QDAEGNEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTK 598

Query: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658
            K+I NL++  YR  G K TVIFADQ+M  GF  AA +G+S G DD+V+PA K   +AE  
Sbjct: 599  KEIGNLIDVVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKVELVAETR 658

Query: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718
             +V E ++Q+  GL+T GE+YNKV+D W+   DR+A AMM  ++  +V+  +GE      
Sbjct: 659  TQVEEYEQQYADGLITRGEKYNKVVDAWSKATDRIADAMMGEIAQPRVL-IEGE---NPD 714

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778
             NS++MMA+SGARGS AQ++QL GMRGLMA+P G IIETPIT+NFKEGL VL+YF STHG
Sbjct: 715  INSVFMMANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHG 774

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838
            ARKGLADTALKTANSGYLTRRLVDVAQD +VTE DCG+  G+ +   +EGGDV V+L + 
Sbjct: 775  ARKGLADTALKTANSGYLTRRLVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQR 834

Query: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898
             LGR  +EDI +PGTD VL P +T L E+  + +    V  +KVRS +TC+++ G CA C
Sbjct: 835  ILGRYAAEDIKEPGTDTVLFPADTYLVEEVAEAVEAAGVQSVKVRSALTCEAEAGICAHC 894

Query: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGG A  A   + ++A N G+ 
Sbjct: 895  YGRDLARGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAET-SFMEATNAGTA 953

Query: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
            K+     V    G LV  SR   +T++ + G+ +E HK PYG+ +   DGD V   + +A
Sbjct: 954  KV-TGPTVVAAHGDLVAMSRNVIVTVVVD-GKDRETHKAPYGARIRVKDGDEVKKNQRLA 1011

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
             W+ +T PI+TEV G V+F D+++G++V  +TD+ TG++   V++  A P  G D+RPA+
Sbjct: 1012 EWDPYTTPILTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASP-RGSDLRPAM 1070

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
             +   +    L  G+D  A+Y LP  A++++ +G EV  G+ +AR+P +    +DITGGL
Sbjct: 1071 GVTLGDAYAKLSSGSD--ARYLLPVGAVLSVSNGDEVKPGEIIARVPTEGAKTRDITGGL 1128

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRD------SGDTYEEMIPKH 1192
            PRVA+LFEAR+PK+ A++AE  G V FG++ K KRR+ IT +       G+  E +IPK 
Sbjct: 1129 PRVAELFEARRPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKG 1188

Query: 1193 RQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHI 1252
            + ++V +G+ I++GD I DG   PHD+LR++G+ A+  Y+ NEVQEVYRLQGV INDKHI
Sbjct: 1189 KHISVHDGDLIQKGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHI 1248

Query: 1253 ETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKAS 1312
            E IVRQML+K  +  +G++  + G+TVE ++  + N K+ + G   A  +  LLGITKAS
Sbjct: 1249 EVIVRQMLQKVEVLDSGETTLIRGDTVEVAEAVLENAKVEKRGGRLATTQPVLLGITKAS 1308

Query: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ--A 1370
            L T SFISAASFQETTRVLT+A+V GK+D L GLKENVIVGRLIPAGTG AY +  Q  A
Sbjct: 1309 LQTRSFISAASFQETTRVLTDASVHGKKDMLEGLKENVIVGRLIPAGTG-AYLRSLQKIA 1367

Query: 1371 KRAQEQQGPSAEQATDNLAALLNAGFSSDD 1400
                 +   + E+A + L A L     S +
Sbjct: 1368 NERDAELTSALEEAIEPLPADLQLELESSE 1397