Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1390 a.a., DNA-directed RNA polymerase subunit beta' from Azospirillum sp. SherDot2

 Score = 1672 bits (4329), Expect = 0.0
 Identities = 844/1402 (60%), Positives = 1075/1402 (76%), Gaps = 19/1402 (1%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            M +L+N        + FD I+I +ASP+ IRSWS+GE+KKPETINYRTFKPERDGLFCAR
Sbjct: 1    MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT +KVRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAK 179
            PSRIGLL+DM L+D+ER+LYFE YVV EPG+T L+   +L+EEE+++  +E+G D FTA 
Sbjct: 121  PSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHSLLSEEEFMNAQDEYGEDAFTAS 180

Query: 180  MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
            +GAEA++ +L+++DL  E ++ RE+L  TNSE KRKKL KRLKL++AF+AS ++PEWMIL
Sbjct: 181  IGAEALRIMLSALDLDEEKKRCREDLRDTNSEAKRKKLVKRLKLIDAFLASQSRPEWMIL 240

Query: 240  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
             V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDIIVRNEKRML
Sbjct: 241  EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QE+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
             L+LHQCGLPKKMALELFKPFIY+KLE  GLA+TIKAAK+MVE+E   VWDIL+EVIREH
Sbjct: 361  ELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH 420

Query: 420  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PV+LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480  ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRT 539
            AR LMMSTNNILSPA+G PIIVPSQD+VLG+YY++ ++ + KGE M     +E E+A   
Sbjct: 481  ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYISMDRPSEKGENMVFANVSEIEQALNA 540

Query: 540  KTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPK--GLPYSLVNQKLG 597
            K   +HA++K R    +  E  +L +   +++TT GR +L +++P+   +P+SL+N+ L 
Sbjct: 541  KVLSIHAKIKARYV-GVDDEGNELIS---IVETTPGRMLLSELLPRHPKVPFSLINRVLT 596

Query: 598  KKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEA 657
            KK + N+++  YR  G K+TVIFAD++M  GF +A  +G+S G DDMV+P AK   + E+
Sbjct: 597  KKDVGNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPVAKEKLVNES 656

Query: 658  EEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQE 717
            +E V+E ++Q+  GL+T GE+YNKV+D+W+   ++VA  MM+ +S+          E  +
Sbjct: 657  KERVKEFEQQYLDGLITQGEKYNKVVDVWSECTEKVASEMMKAIST---------TEAGK 707

Query: 718  SFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTH 777
              NS+YMMA SGARGSAAQIRQLAGMRGLMA+P G IIETPI +NFKEGL VL+YF STH
Sbjct: 708  PVNSVYMMAHSGARGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTH 767

Query: 778  GARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTE 837
            GARKGLADTALKTANSGYLTRRLVDVAQD ++ EHDCGT  G+ +   I+GG+V   L +
Sbjct: 768  GARKGLADTALKTANSGYLTRRLVDVAQDAIIVEHDCGTERGITVKAVIDGGEVISPLGD 827

Query: 838  LALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQ 897
              LGR V   ++ P   E+++    L+DE     I  + +D +K+RSV+TC++  G CA+
Sbjct: 828  RILGRTVVGAVIDPLNGELIVEDAGLIDEPTVDRIERSGIDSVKIRSVLTCETRDGVCAK 887

Query: 898  CYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGS 957
            CYGRDLARG LVN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA   A ++ I+A    +
Sbjct: 888  CYGRDLARGTLVNTGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQIEAAFEAT 947

Query: 958  VKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETV 1017
            V+++N   V N  G  V+  R++E+ ++DE GR + +H++PYG+ L   +G  V  G  +
Sbjct: 948  VRINNRNVVMNSSGIPVVMGRSTEVILLDEQGRERARHRVPYGAKLLADEGVKVERGAKL 1007

Query: 1018 ANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPA 1077
            A W+ +T+PIITE AG  +++D+++G+++    D+ TG+SS  V +   +P  G D++P 
Sbjct: 1008 AEWDPYTLPIITERAGTARYIDLVEGISMREVMDEATGISSKVVVDWRQQP-RGADLKPR 1066

Query: 1078 IKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGG 1137
            I LVD  G+ + +P   + A+YF+   AI+++++GAEV  GD LARIP++S   +DITGG
Sbjct: 1067 IALVDERGELITLP-NGLEARYFMSVDAILSVENGAEVRAGDVLARIPRESSKTRDITGG 1125

Query: 1138 LPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRD-SGDTYEEMIPKHRQLN 1196
            LPRVA+LFEAR+PK+ AI++E SG V FGK+ K KRR+++  D SGD  E +IPK + ++
Sbjct: 1126 LPRVAELFEARRPKDFAIISEMSGRVEFGKDYKTKRRIVVRNDESGDEKEYLIPKGKHIS 1185

Query: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256
            V EG+ +ERGD++ DG   PHDIL + G+ A+  Y+ NE+Q+VYRLQGVKINDKHIE IV
Sbjct: 1186 VQEGDYVERGDLLMDGNPVPHDILAVMGVEALADYLINEIQDVYRLQGVKINDKHIEVIV 1245

Query: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316
            RQML+K  IT AG++ FL GE V+  +    N K V EG +PA     L GITKASL T 
Sbjct: 1246 RQMLQKVEITDAGETTFLVGEQVDRQEFDEENEKTVAEGLQPAHGHPVLQGITKASLQTR 1305

Query: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ 1376
            SFISAASFQETTRVLTEAAV GK D+L GLKENVIVGRLIPAGTG   ++ +     +++
Sbjct: 1306 SFISAASFQETTRVLTEAAVGGKVDNLEGLKENVIVGRLIPAGTGSVVNRLKLIAAERDR 1365

Query: 1377 QGPSAEQATDNLAALLNAGFSS 1398
            +      A +   AL   G  S
Sbjct: 1366 EAALEAGAPEETPALPTPGEES 1387