Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1390 a.a., DNA-directed RNA polymerase subunit beta' from Alteromonas macleodii MIT1002

 Score = 2090 bits (5414), Expect = 0.0
 Identities = 1065/1402 (75%), Positives = 1186/1402 (84%), Gaps = 18/1402 (1%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLK Q+KTEEFD I+IGL+SPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
Sbjct: 1    MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVT TKVRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIERVLYFE YVVTEPGMT LER Q+L EEEYLD LEE GDEF AKM
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFEAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+ DLL ++D+ A+   MREEL + NSETKRKK+TKRLKL+E+F  SGNKPEWMI+T
Sbjct: 181  GAEAVFDLLTALDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKK+VERE   VWD+LD+VIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT+EAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYY+TR+K+N  GEGM  T P EAEKAYRT 
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             AELH+RVKVRITE    E+G  T +  + DTTVGRA+   I+PKGLP+ ++NQ +GKKQ
Sbjct: 541  NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS LLN  YR LGLKDTVI ADQIMYTGF YA ++G SVGIDDMV+PAAK   I  AE E
Sbjct: 601  ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQ+GLVTAGERYNKVIDIW++ N++VAKAMM+NL ++ VINR GE+E+Q SFN
Sbjct: 661  VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQSSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            S+YMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+V+T  DCGT EGV MTP IEGGDV   L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRVV+ED+LKPGT+EVL+ RN LLDE    ++  NSVDQI VRSV+TCD+DFG CA+CYG
Sbjct: 841  GRVVAEDVLKPGTNEVLVERNVLLDEALVDMLEANSVDQIMVRSVITCDNDFGVCAKCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH+V  GE+VGVIAAQSIGEPGTQLTMRTFHIGGAAS A+AENS+Q K  GS+KL
Sbjct: 901  RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
            HNAKFV N DGK+VI SR++ELT+IDE GR KE++K+PYG++LS  DG  +AAG+ VANW
Sbjct: 961  HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + H+ PIITE A ++ F D ID      Q D+LTGL+   V + A               
Sbjct: 1021 DPHSHPIITERAAKISFAD-IDDSNTEMQQDELTGLTRIVVKDLAK-------------- 1065

Query: 1081 VDANGKDVLIPGTDMPAQYF-LPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLP 1139
            V++    +++   +   Q   LP    +   +G   N GD LARIPQ+S   +DITGGLP
Sbjct: 1066 VNSKEPKLILESDEFGLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLP 1125

Query: 1140 RVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFE 1199
            RVADLFEARKPKEPAILAE SGT+ FGKETKGK+RL+IT   GD YEEMIPK RQLNVFE
Sbjct: 1126 RVADLFEARKPKEPAILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFE 1185

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GE++E+G+VIADGPESPHDILRLRGI AV  YI NEVQEVYRLQGVKINDKHIE ++RQM
Sbjct: 1186 GEKVEKGEVIADGPESPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQM 1245

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRKC IT  GD++FL GE VE S VK+ANR++ + GK PA++E +LLGITKASL+TESFI
Sbjct: 1246 LRKCIITNPGDTQFLEGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFI 1305

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQ--EQQ 1377
            SAASFQETTRVLTEAAV GK DDLRGLKENVIVGRLIPAGTGFAYH+ R  +R +  E+ 
Sbjct: 1306 SAASFQETTRVLTEAAVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEM 1365

Query: 1378 GPSAEQATDNLAALLNAGFSSD 1399
              SA +A   L   LNAG   D
Sbjct: 1366 SVSAAEAEQALTEALNAGADED 1387