Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1405 a.a., DNA-directed RNA polymerase subunit beta' from Acinetobacter radioresistens SK82

 Score = 1966 bits (5094), Expect = 0.0
 Identities = 983/1403 (70%), Positives = 1160/1403 (82%), Gaps = 20/1403 (1%)

Query: 1    MKDLLNFLKAQ-----HKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDG 55
            +KDLL+ ++ +     H   EFD I+IGLASP+MI+SWS GEVKKPETINYRTFKPERDG
Sbjct: 10   LKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG 69

Query: 56   LFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIW 115
            LFCA+IFGPVKDYECLCGKYKR+K++GVICEKCGVEVT  KVRR+RMGHIELASPVAHIW
Sbjct: 70   LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW 129

Query: 116  FLKSLPSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDE 175
            FLKSLPSRIGLL+DM LRDIERVLYFE YVVT+PGMT  E+ Q+LT+EEY + LEE GDE
Sbjct: 130  FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLTDEEYYNALEEHGDE 189

Query: 176  FTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPE 235
            FTAKMGAEA++DLL  +DL AE  ++REE+  T SETK KK +KRLKL+EAF  S NKPE
Sbjct: 190  FTAKMGAEAVQDLLKDIDLEAEISRLREEIPQTTSETKLKKASKRLKLMEAFKESNNKPE 249

Query: 236  WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNE 295
            WM++ VLPVLPPDLRPLVPL+GGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNE
Sbjct: 250  WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 309

Query: 296  KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355
            KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
Sbjct: 310  KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 369

Query: 356  TVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEV 415
            TVGP LRLHQCGLPKKMALELFKPFI++KL+  G ATTIKAAKKMVERE   VWD+L  V
Sbjct: 370  TVGPSLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLAHV 429

Query: 416  IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475
            IR+HPV+LNRAPTLHRLG+QAFEP+LIEGKAI+LHPLVC A+NADFDGDQMAVHVPLTLE
Sbjct: 430  IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLTLE 489

Query: 476  AQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEK 535
            AQLEAR LMMSTNNILSPA+G+PIIVPSQDVVLGLYY+TR+ +NAKGEGM      E  +
Sbjct: 490  AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR 549

Query: 536  AYRTKTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQK 595
            A  T    +HARVK R+ +TI +ENG+   +T ++ TT GR +LW++VP+GL +  +N +
Sbjct: 550  ALATGQVAMHARVKARVHQTIINENGEREQQTIIVQTTPGRCLLWEVVPEGLSFEQINVE 609

Query: 596  LGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIA 655
            + KK IS L+N  YRKLGLKDTVIFADQ+MY GF  A  SGVSVG++DMV+P  K   I 
Sbjct: 610  MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMVIPPQKQAIID 669

Query: 656  EAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEK 715
            +AE EVREI++QF+ G VTAGERYNKV+DIWA TND+VAKAMM+NLS   V NR+G++EK
Sbjct: 670  KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSFVSVTNREGQEEK 729

Query: 716  QESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFIS 775
            Q+SFNSIYMM+DSGARGSAAQIRQLAGMRGLMA+PDGSIIETPI ANF+EGL VLQYFIS
Sbjct: 730  QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS 789

Query: 776  THGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVAL 835
            THGARKGLADTALKTANSGYLTRRLVDVAQD+V+TE DCGT+ G+ MTP I+GGDV   L
Sbjct: 790  THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTVGGLTMTPLIQGGDVIEPL 849

Query: 836  TELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCC 895
             +  LGRV++ED+++PG++EVL PRNTL+DEK    + +  +D+I+VRSV++CDS FG C
Sbjct: 850  RDRVLGRVIAEDVIRPGSEEVLFPRNTLIDEKIATQLEEAGIDEIRVRSVISCDSAFGVC 909

Query: 896  AQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNN 955
            A+CYGRDLARGHLVN GE+VGV+AAQSIGEPGTQLTMRTFH+GGAAS  +A NS+Q +N 
Sbjct: 910  AKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK 969

Query: 956  GSVKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGE 1015
            G+V+ HN K V +  G LV  SR+ E+ I DE GR +E++KLPYG+ +   +G+AV AG 
Sbjct: 970  GTVRFHNVKTVQHAKGHLVSVSRSGEVGIADELGRERERYKLPYGASILLKEGEAVEAGG 1029

Query: 1016 TVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMR 1075
             VA W+ HT P++TEVAG+ +F  + DGVT + +TDD TG+++ E+    ARPA+GKD+R
Sbjct: 1030 IVATWDPHTHPLVTEVAGKARFSQITDGVTATSKTDDATGMTTVEILPVTARPASGKDLR 1089

Query: 1076 PAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDIT 1135
            PAI L  A+G +           YFLP   IV +  G  + VGD + R+PQ+S   +DIT
Sbjct: 1090 PAIVLDTADGSEQF---------YFLPQNTIVTVRSGETIGVGDVIGRVPQESSRTRDIT 1140

Query: 1136 GGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSG-DTYEEMIPKHRQ 1194
            GGLPRVADLFEARKPKE AILAE SG VSFGKETKGK RL+IT D G + YEE+IPK RQ
Sbjct: 1141 GGLPRVADLFEARKPKEHAILAEVSGVVSFGKETKGKNRLVITPDDGAEVYEELIPKWRQ 1200

Query: 1195 LNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIET 1254
            +NVFEGE + RG+VI+DGP++PHDILRL+G  A+T YI NEVQ+VYRLQGVKINDKHIE 
Sbjct: 1201 INVFEGEHVNRGEVISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEV 1260

Query: 1255 IVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLA 1314
            IVRQMLRK  IT  GDS F+ GE V+Y +V   N+ ++ + K PA+FER+L+GITKASL+
Sbjct: 1261 IVRQMLRKVEITDGGDSSFIKGEQVDYIRVVQENQAVLSQNKFPAKFERQLMGITKASLS 1320

Query: 1315 TESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQ 1374
            T+SFISAASFQETTRVLTEAAV+GK DDLRGLKENV+VGRLIPAGTG AYH +R     +
Sbjct: 1321 TDSFISAASFQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLER-----R 1375

Query: 1375 EQQGPSAEQATDNLAALLNAGFS 1397
             Q+  +AE A  N  + ++  FS
Sbjct: 1376 RQEAEAAEFALANDFSEVDQAFS 1398