Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1387 a.a., DNA-directed RNA polymerase subunit beta from Rhodanobacter sp000427505 FW510-R12

 Score = 1848 bits (4787), Expect = 0.0
 Identities = 937/1384 (67%), Positives = 1121/1384 (80%), Gaps = 44/1384 (3%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD----PEGQYGLEAAFRSV 56
            M YS+TEKKRIRKDFG RP VL +P LL+IQ DS+ +F+++       G  GL AA +SV
Sbjct: 2    MAYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYREFLQEHVAPKQRGDKGLHAALKSV 61

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114
            FPI SY+GN+ L+YV YRLGEP FD +EC+ RG+T+  PLR  +RLVI+DKD+PA    V
Sbjct: 62   FPISSYSGNAALEYVDYRLGEPAFDERECRNRGMTFGAPLRTTVRLVIYDKDSPASKKVV 121

Query: 115  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
            K IKEQEVYMGEIPLMT+ GTF+INGTERVIVSQLHRSPGVFFD D+GKTHSSGK+L++A
Sbjct: 122  KYIKEQEVYMGEIPLMTDTGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFSA 181

Query: 175  RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234
            R+IPYRGSWLDFEFDPKD L+ RIDRRRKLP +++LRALG  + E+L IFFE   F + +
Sbjct: 182  RVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLGIFFEHNVFHLGN 241

Query: 235  QT-LMMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIV 293
            +    +ELV ERLRGET +FD+   GKV VE G+R+TARH+RQL  + +  +EVP +Y V
Sbjct: 242  KGGTTLELVAERLRGETLSFDLAIGGKVLVEAGKRITARHVRQLAAENITALEVPDDYPV 301

Query: 294  GKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRV 353
            G++ A D V+  TGEL+ +AN EI+ E + N  +AG + +  L+ NDLD G ++S TLR+
Sbjct: 302  GRIVATDIVDAKTGELLASANDEITAEQMENFRKAGIEVVPTLYVNDLDRGAYISHTLRI 361

Query: 354  DSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGRED 413
            D+T   + ALVEIYRMMRPGEPPTK+AA++LF +LFF+ +RYDLS VGRMKFN  +GR++
Sbjct: 362  DNTKTPLEALVEIYRMMRPGEPPTKDAAQNLFFNLFFTFDRYDLSAVGRMKFNRRVGRKE 421

Query: 414  AEEQGTL----------------------DEVDIIEVMKKLISIRNGKGEVDDIDHLGNR 451
                G L                      +  DI++V+K LI I+NG G VDDIDHLGNR
Sbjct: 422  ILGPGVLYDHKYFSERKEEESQRLVKEQGESSDILDVLKVLIDIKNGHGTVDDIDHLGNR 481

Query: 452  RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQL 511
            R+RSVGEMAEN FR+GLVRVERAV+ERLSL + D + PQDLINAKP++AAVKEFFGSSQL
Sbjct: 482  RVRSVGEMAENTFRIGLVRVERAVRERLSLAEADGLTPQDLINAKPVAAAVKEFFGSSQL 541

Query: 512  SQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGL 571
            SQFMDQNNPLSEVTHKRR+SALGPGGLTRERAGFEVRDVH THYGR+C IETPEGPNIGL
Sbjct: 542  SQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGL 601

Query: 572  INSLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFAD 631
            INSL+ +AR N YGFLETPYR+V N  VTD+VDYLSAIEEG  VIAQAN+ L + G F +
Sbjct: 602  INSLAVYARTNAYGFLETPYRKVANSKVTDKVDYLSAIEEGDHVIAQANSPLDKHGAFLE 661

Query: 632  ELVTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVP 691
            + V+ R +GES L P   VDYMDV+  Q VS+AA+L+PFLEHDDANRALMGANMQRQAVP
Sbjct: 662  DFVSCRFRGESELRPAAEVDYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVP 721

Query: 692  TLRSEKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIY 751
            TLRS+ PLVGTGIER VA DSGV   AKRGGVI  VDA+RIVV+VNEEE+   +AG+DIY
Sbjct: 722  TLRSQTPLVGTGIERAVARDSGVIVSAKRGGVIDQVDAARIVVRVNEEEVGGNDAGVDIY 781

Query: 752  NLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYN 811
             LTKYTRSNQNT +NQRP V  G+ VA+GD LADG STDLGELALGQNM IAFMPWNGYN
Sbjct: 782  TLTKYTRSNQNTNLNQRPLVNVGDVVAKGDTLADGSSTDLGELALGQNMLIAFMPWNGYN 841

Query: 812  FEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIV 871
            FEDSIL+SERVVQ+DR+T+IHI+ELSC+ARDTKLGAEEITADIPNVGE AL++LDESGIV
Sbjct: 842  FEDSILLSERVVQEDRYTSIHIEELSCIARDTKLGAEEITADIPNVGEQALARLDESGIV 901

Query: 872  YIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDV 931
            YIGAEVK GDI+VGKVTPKGE+QLTPEEKLLRAIFGEKASDVKD+SLRVP  + GTVIDV
Sbjct: 902  YIGAEVKAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV 961

Query: 932  QVFTRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLA-------GG- 983
            QVFTRDG+EKDKRA +IE+ ++K  +KDL ++F+ILE  + +R+R+ L+        GG 
Sbjct: 962  QVFTRDGIEKDKRAKQIEETEVKRVRKDLDDQFRILEVAIYSRMRTQLVGKSAMSGPGGL 1021

Query: 984  -----YTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQ 1038
                  T+A L  +++  W +  +++EE+   LE+ AEQ    K +FDK+F+ K+ KITQ
Sbjct: 1022 KRGAEITDAYLDGLKKDDWFKVNVKDEEVTEFLERAAEQIKRHKEEFDKRFKEKQGKITQ 1081

Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVL 1098
            GDDLAPGVLK+VKV+LAVKRRIQPGDKMAGRHGNKGV+S + PVEDMPY  NG+ VDI L
Sbjct: 1082 GDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMANGEAVDICL 1141

Query: 1099 NPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVYD--LGDTRQ 1156
            NPLGVPSRMNIGQILEVHLG AAKG+G KI +MI+ Q+++A++R+FL ++Y+  +    Q
Sbjct: 1142 NPLGVPSRMNIGQILEVHLGWAAKGLGKKIQKMIEAQEKVAEIRKFLDQIYNSHVAGAVQ 1201

Query: 1157 RVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRT 1216
             VD+  L+D+++  LA NL+ G+P+ATPVFDGA E+ IKAML+LADLP SGQ  L+DGRT
Sbjct: 1202 HVDLKSLTDKEIFALATNLQEGVPMATPVFDGAEETEIKAMLKLADLPESGQTMLYDGRT 1261

Query: 1217 GDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1276
            G+AF+RPVTVGYM+ LKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWA
Sbjct: 1262 GEAFDRPVTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA 1321

Query: 1277 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINI 1336
            LEAYGAAYTLQEMLTVKSDDV GR +MYKNIVDGNH M  GMPESFNVL+KEIRSL I+I
Sbjct: 1322 LEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMSAGMPESFNVLVKEIRSLAIDI 1381

Query: 1337 ELED 1340
            +LE+
Sbjct: 1382 DLEE 1385