Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score = 1700 bits (4403), Expect = 0.0
 Identities = 856/1368 (62%), Positives = 1071/1368 (78%), Gaps = 33/1368 (2%)

Query: 3    YSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD-PEGQY---GLEAAFRSVFP 58
            YSYTE+KRIRK FG R  V++IPYLL +Q D++  F++   P  Q    GL+AAF + FP
Sbjct: 7    YSYTERKRIRKSFGNRDSVVEIPYLLQMQKDAYTAFLQAGIPPKQRTVEGLQAAFDAAFP 66

Query: 59   IQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG---TVK 115
            I S+NG  E++++ Y L +P FDV+ECQ RG+T++  +R K++L+I+D+++       VK
Sbjct: 67   IVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKVVK 126

Query: 116  DIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175
            ++KEQEVYMGE+PLMT+ G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR
Sbjct: 127  EVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 186

Query: 176  IIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQ 235
            +IPYRGSWLDFEFDPKD LY R+DRRRK+P +I+L+A+G     IL  FF   NF + D 
Sbjct: 187  VIPYRGSWLDFEFDPKDMLYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLMDS 246

Query: 236  TLMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVG 294
               ME V ERLRGE A FDI +  GKV V K +RVTARH R+LE+ G   I VP +++VG
Sbjct: 247  GAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQGGTTHISVPEDFLVG 306

Query: 295  KVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVD 354
            +V A++ V+  +GE++  AN E++   L  L  AG + ++V++TN+LD G ++S+TLR+D
Sbjct: 307  RVIARNIVDADSGEILAKANDELTEALLKKLRTAGVQDVQVIYTNELDQGAYISQTLRID 366

Query: 355  STTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDA 414
             T D  +A V IYRMMRPGEPPT++A ++LF+ LF++ + YDLS VGRMKFN+ +GR+++
Sbjct: 367  ETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKVGRDES 426

Query: 415  EEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474
                 L   DI+ V+K L+ +RNG GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+A
Sbjct: 427  TGPMVLTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEKA 486

Query: 475  VKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 534
            VKERL   + + +MP DLIN+KPISAA+KEFFG+SQLSQFMDQ NPLSE+THKRR+SALG
Sbjct: 487  VKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALG 546

Query: 535  PGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRV 594
            PGGLTRERAGFEVRDVHVTHYGR+CPIETPEGPNIGLINSL+ +AR NEYGF+ETPYRRV
Sbjct: 547  PGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRRV 606

Query: 595  VNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMD 654
            V+  VT+E+DYLSAIEEG++VIAQANA L ++G    +LV+AR+ GES L   E + YMD
Sbjct: 607  VDSKVTNEIDYLSAIEEGKYVIAQANAALDKDGVLTGDLVSAREAGESILVGAERIQYMD 666

Query: 655  VATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGV 714
            V+  Q+VS+AASL+PFLEHDDANRALMGANMQRQAVP LR EKP+VGTGIER  AVDSG 
Sbjct: 667  VSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPMVGTGIERVSAVDSGT 726

Query: 715  TAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPG 774
               A RGG++  VDA+R+VV+VN+ E   GE G+DIYNL KY RSNQNT I+QRP V  G
Sbjct: 727  VVTATRGGIVDYVDATRVVVRVNDAEAAAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKRG 786

Query: 775  EPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQ 834
            + +A+GDV+ADG STDLGELALGQNM IAFMPWNGYNFEDSIL+SERVV +DR+T+IHI+
Sbjct: 787  DKIAKGDVVADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE 846

Query: 835  ELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQ 894
            EL  +ARDTKLGAEEIT DIPN+ E  L++LDESGI+Y+GAEV+ GD LVGKVTPKGET 
Sbjct: 847  ELVVMARDTKLGAEEITRDIPNLAEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGETT 906

Query: 895  LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLK 954
            LTPEEKLLRAIFGEKASDVKDTSLRV     GTVIDVQVFTR+G+ +DKRA +I   +LK
Sbjct: 907  LTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDELK 966

Query: 955  EAKKDLTEEFQILEGGLLARVRSVL-----------LAGG--YTEAKLGSIERKKWLEQT 1001
              + DL ++ +I+E     R+  +L           LA G    +A L S+E+  W +  
Sbjct: 967  RFRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPNKLAKGTKLDKAYLSSVEKFHWFDIR 1026

Query: 1002 LENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061
               +E+  QLE +    ++ +  FD  FE KR+K+TQGD+L  GVLK+VKVYLAVKRR+Q
Sbjct: 1027 PAEDEVATQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQ 1086

Query: 1062 PGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121
            PGDKMAGRHGNKGV+SKI PVEDMP+  +G P DI LNPLGVPSRMN+GQ+LEVHLG A 
Sbjct: 1087 PGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPCDICLNPLGVPSRMNVGQVLEVHLGWAG 1146

Query: 1122 KGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPV 1181
            KGIG +I  +++++ ++A+LR+F++++Y+ G  R   ++ +LSD ++  +A NL++G   
Sbjct: 1147 KGIGQRIGDLLQQEAKVAELRKFMEQLYN-GSGRPE-ELEQLSDTELLAMAANLQSGATF 1204

Query: 1182 ATPVFDGAPESSIKAMLELA---DLPASGQLT-------LFDGRTGDAFERPVTVGYMYM 1231
            ATPVFDGA E  I+ ML+LA   D+     LT       LFDGRTGD FERPVTVGYM+ 
Sbjct: 1205 ATPVFDGASEEEIRGMLKLAYPDDIAKLKGLTETRTQAYLFDGRTGDQFERPVTVGYMHF 1264

Query: 1232 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1291
            LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQEMLT
Sbjct: 1265 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT 1324

Query: 1292 VKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339
            VKSDDV GRTK+Y++IV G H++E GMPESFNVL+KEIRSLG++IELE
Sbjct: 1325 VKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGLDIELE 1372